Scyliorhinus torazame (cloudy catshark): 140430850
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Entry
140430850 CDS
T11303
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
stoz Scyliorhinus torazame (cloudy catshark)
Pathway
stoz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
stoz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140430850 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stoz03021
]
140430850 (sf3b3)
03041 Spliceosome [BR:
stoz03041
]
140430850 (sf3b3)
03036 Chromosome and associated proteins [BR:
stoz03036
]
140430850 (sf3b3)
Transcription machinery [BR:
stoz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
140430850 (sf3b3)
Spliceosome [BR:
stoz03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
140430850 (sf3b3)
Complex B
140430850 (sf3b3)
Complex C
U2 SnRNP specific factors
140430850 (sf3b3)
Chromosome and associated proteins [BR:
stoz03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
140430850 (sf3b3)
TFTC complex
140430850 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
140430850
NCBI-ProteinID:
XP_072374703
LinkDB
All DBs
Position
10:complement(110925487..110982708)
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISHAIHGNFSGTKMQEIVVSRGKILELLRPDANTGKVHTLLTVEAFG
IIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNIFDKVHQETFGKSGCRRIVPGQY
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADSDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVSTAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDDEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILTCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEYDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSTDVVCMSLANVPPGEQ
RSRFLAVGLIDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGAEKQDELGEKGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVSFS
LQYTPRKFVIHPESNNVIVIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGSPKAGSGQWASVVRVMNPIQGNVYDQIQLEQNEAAFSIAVCRFGNGG
DDWYVLVGVGKDLILNPRSVGGGYIYTYKLINSGEKLEFVHKTSIEDVPTAIAPFQGRVL
VGLGKLLRIYDLGKKKLLRKCENKHIPNFIVAIHTIGHRVIVSDVQESFFWIRYKRNENQ
LIIFADDTLPRWITTACLLDYETMAGADKFGNISVVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEIIVNYHVGESVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEHPPLCGRDHLSFRCYYFPVKNVIDGDLCEQFNSMDPIKQKSVAEELDRT
PAEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttttgtataacctgactcttcagagagcaactggcatctcgcatgccattcatgga
aacttttcaggcaccaaaatgcaggagattgttgtttccagggggaagatcttggagtta
ctccgcccagatgcaaatactgggaaggtacatacacttcttacggtggaggcctttggg
ataattcgttctctaatggccttcaggttaactggaggtaccaaagattacattgtagtt
ggtagtgactctggtaggatcgttatcctggaatatcagccatccaagaatatttttgat
aaggtccatcaggaaacctttgggaagagtggatgccgccgtattgtacctggacagtac
ctagcagttgacccgaaaggccgtgccgttatgataggtgccattgagaagcaaaagctg
gtctatattttgaacagagatgctgctgctcgtctcaccatctcctcaccactagaagca
cacaaagcaaacacactggtgtatcatgtggttggtgtggatgtgggctttgagaatcct
atgtttgcttgtcttgagatggactatgaggaggcagacagcgatcctactggtgaagca
gctgctaacactcaacagacgttgacgttctatgagttggacttgggcctgaatcacgtt
gtaagaaagtacagtgaacctctggaggaacatggcaacttcctcattacagttccagga
ggctctgatggaccgagcggtgtactaatctgctctgaaaattacatcacttataaaaat
tttggggaccagcctgacatccggtgccccatccccaggaggaggaatgacctggatgat
cccgagagaggaatgatcttcgtctgctctgctacgcataaaacaaagtccatgttcttc
tttctggcacagactgaacaaggggacatcttcaaaattacactggaaacagacgaggac
atggtgactgaaatcaggctgaagtattttgacactgttcctgtgtcgactgccatgtgt
gtcctgaagaccggatttctctttgttgcatcagaatttggcaatcattacctttatcag
attgcacatctaggagatgatgatgatgagccagagttctcctcggccatgcctttggaa
gaaggagatacctttttctttcagccacgacctctcaagaacctggtactggtggacgaa
ctagacagcctttcaccaattttgacatgccagattgctgatctggccaatgaagacaca
cctcagctgtatgttgcctgtgggaggggtccgcggtcatcattgagagtcctgaggcat
ggtcttgaggtatcggaaatggctgtctcagagctgcccggtaaccctaatgccgtatgg
actgtaagaagacatgtggaagatgagtatgatgcatacatcattgtgtctttcgtgaat
gccacgctggtactgtctattggtgaaaccgtagaggaagtgacagactctggatttctg
ggtaccacccccaccctctcctgttccttacttggtgaggatgcactggtccaggtgtac
cccgatggaatccgtcacatccgtgctgataagagagtcaatgagtggaagacccctggt
aaaaagacgattgtgaaatgtgctgtgaaccagcggcaggtggtgattgctttgaccggc
ggggaactggtctactttgagatggatccgtctggacaactcaatgagtacacggaacgg
aaagagatgtcaactgatgtggtctgcatgagtttagcaaatgtccctccaggggaacag
cgttctcgatttctggctgttggtctcatagacaacactgtccgaattatttctctggac
ccttcggattgtctgcagcctctcagtatgcaagcccttcctgcacagcctgaatctctc
tgtatagttgagatgggaggtgcagagaaacaggatgagctgggagagaagggttccatt
ggcttcttgtacttaaatattggtttacagaacggagtattattaaggacagtgttggac
ccagtcactggagacttgtctgacacacggaccaggtatctcggatcacggcctgtcaag
cttttcagagtcaggatgcaagggcaagaagcggttttggccatgtccagcaggtcgtgg
ctaagctactcttaccaatcccgcttccatctgacacctctgtcctatgaaactctggaa
tatgcatctggctttgcctctgagcagtgtcctgagggtattgtggcaatctccaccaat
acactgagaatcttggctcttgaaaaacttggagcagtgttcaaccaggtttccttctct
ttgcaatatactccgaggaaatttgtcattcacccagagagcaacaacgtcattgtcatt
gagactgatcataatgcctacacggaggccaccaaagcccagcgcaaacagcaaatggct
gaggaaatggtagaagcagctggagaggacgagcgagaattggcagcagagatggcagct
gcctttttgaatgagaatttacctgaatccatttttggatctcctaaggcagggagtggg
caatgggcatctgttgttcgagtaatgaaccccatccagggcaacgtgtatgatcagatc
cagttggaacagaatgaagctgctttcagtattgctgtttgtaggtttggcaatggtggt
gatgattggtacgtgctggttggagttggcaaagatctgatccttaatcctcgttcagtt
ggaggtggatacatttacacctacaagctaatcaacagcggcgagaagctggaatttgtg
cacaagacatccattgaagatgttccaacggccattgcccctttccagggccgtgttctg
gtcggattgggaaaactcctgcgcatctatgacctggggaagaagaagctactgagaaaa
tgtgaaaataagcacattccaaacttcatagtggcgatccataccattggacatagagtc
atcgtctccgatgtccaggaaagcttcttctggattcgatataaacgaaatgagaaccag
ctgatcatctttgctgatgacacgttgccccgctggatcaccacggcttgtctgttggac
tatgaaaccatggctggtgctgataaatttggcaacattagtgtggtgagattgcctcca
aacacaagtgacgatgttgacgaggatcccactgggaacaaagcattatgggacagaggc
ctacttaatggagcttcccagaaggctgagatcattgttaattatcatgtgggagaatca
gtcctttcactgcagaaaaccacgttaattcctggtggctcagaatcgcttgtgtacaca
acactgtctggaggtatcgggatcctggtcccattcacgtcacacgaggatcatgatttc
ttccagcacctggagatgcacatgagatcagaacatcctccactctgtgggcgtgaccac
cttagttttcgctgttactatttccctgtaaagaatgtaatcgatggtgacttgtgtgaa
cagtttaattccatggatcccatcaaacagaaaagtgtggcagaggaacttgacagaaca
ccagctgaggtgtccaaaaaactggaagatatccgaacccgttacgcattttag
DBGET
integrated database retrieval system
