Salinispora tropica: Strop_0230
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Entry
Strop_0230 CDS
T00504
Name
(GenBank) helicase, RecD/TraA family
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
stp
Salinispora tropica
Pathway
stp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
stp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Strop_0230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stp03400
]
Strop_0230
Enzymes [BR:
stp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Strop_0230
DNA repair and recombination proteins [BR:
stp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Strop_0230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
UvrD_C_2
SH3_13
Viral_helicase1
HHH_5
AAA_11
AAA_22
TraI_hel_assoc_N
Helicase_RecD
PIF1
HTH_IclR
NPHP3_N
AAA_16
UvrD-helicase
UvrD_C
nSTAND3
NACHT
AAA
MeaB
P-loop_TraG
DEAD
AAA_12
Motif
Other DBs
NCBI-ProteinID:
ABP52715
UniProt:
A4X1G5
LinkDB
All DBs
Position
complement(263470..265695)
Genome browser
AA seq
741 aa
AA seq
DB search
MADVTAAPRPALATLDAVLERLTYVNEESGYTVARVATDRGSDLLTVVGALLGAQPGESL
RLHGRWSSHPKYGRQFEVDSYTTVLPATIQGIQRYLGSGLVKGIGPVFAERIVAHFGLET
LRIIEEEPARLVEVPGLGPKRTAKITAAWEEQQAIKEVMVFLQGVGVSTSLAVRIYKQYG
DTSTDVVTKEPYRLAADVWGIGFKTADTIAQSVGIPHDSPQRVMAGLQYTLSEATDNGHC
YLPEPELIADATKILDVPADLVTRCLDDLVAEEGVVRESLPGGDAEPVRAVYLVPFHRAE
RSLATSLLRLLDDGTDRLPHFAGVDWAKALTWLKARTGNDLAPEQEQAVRLALTSKVAVL
TGGPGCGKSFTVRSIVELAAAKRAKVTLVAPTGRAAKRLSELTGHPAATVHRLLQLRPGG
DASYDRDNPLDVDLLVVDEASMLDLILANKLVKAVPPGAHLLLVGDVDQLPSVGAGEVLR
DLLAAPAIPRVRLTQIFRQAAQSGVVTNAHRINAGRPPLLQGLPDFFLFACDDTEATAER
TVDVACSRIPAKFRLDPRRDVQVLTPMHRGPAGSGALNTLLQQRLTPHREGQPERRAGGR
VFRIGDKVTQIRNNYDKGEAGVFNGTLGIVTQLSTEEQTLTVRTDEDESIDYDFDELDEL
AHAYAMTIHRSQGSEYPAVVIPLTTSAWMMLQRNLLYTAVTRAKQLVVLVGSRRALAAAV
RTVGAGRRHTALNHRLAAATP
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgtgaccgctgccccccgtcccgcgctggcgacgctcgacgcggttctagag
cgacttacgtacgtcaacgaggaatccggctacaccgtcgcccgggtcgccaccgaccgc
ggtagtgatctgttgacggtggtgggtgcgctgctgggcgcgcagccaggggagagcctg
cggctgcacgggcgctggtcctcgcaccccaagtacggtcggcagttcgaggtcgactcg
tacaccacggtcctgccggccacgatccagggcatccagcgctacctcggctcgggcctg
gtgaagggcatcgggccggttttcgccgagcggatcgtcgcccatttcggcctggagacg
ctgcggatcatcgaggaggagccggcccgcctggtggaggtgccggggttgggcccgaaa
cgcaccgcgaagatcaccgcggcgtgggaggaacagcaggcgatcaaggaggtcatggtc
ttcctccagggggtcggcgtctcgacctccctcgcggtacggatctacaagcagtacggc
gacacctccaccgacgtggtcacgaaggagccgtaccggctggcagccgatgtgtgggga
atcggcttcaagaccgccgacaccatcgcccagtcggtcggtattccgcacgacagcccg
cagcgggtcatggctggcttgcagtacacgctctccgaggccaccgacaacggccactgc
tacctacccgaaccggagctgatagcggacgccacgaaaatcctcgatgtgccggccgac
ctcgtcacccgctgcctggatgacctggtcgccgaggagggcgtcgtccgggagtcgcta
ccgggcggcgacgcggagccggtgcgggcggtgtatctggtgccgttccaccgggcggag
cggtctctggccaccagcctgctccgcctgctcgacgatgggaccgatcggttgcctcac
ttcgcgggcgtcgactgggccaaggccctgacctggctgaaggcgcgtaccggcaacgac
ctcgcccccgagcaggagcaggcggttcggctcgcgctgacctcgaaggtcgcggtgctg
accggtgggccggggtgcggcaagagcttcaccgtccgttcgatcgtcgaactggcggct
gccaagagagccaaggtcaccctggtggccccgaccgggcgggccgccaagcgtctctcc
gagctgaccgggcaccccgccgccacggtgcatcgcctgttgcagctacgcccgggcggg
gacgcctcctacgaccgggacaaccccctcgacgttgacctgctcgtcgtggacgaagcc
tccatgctcgacctcatcctggccaacaagctcgtcaaggccgtcccacccggcgcgcac
ctgctgctggtcggcgatgtcgaccagctcccctccgtcggtgccggtgaggtgttgcgc
gatctactcgccgctccagccatcccgcgggtgcggttgacccagatcttccgccaggcc
gcccagtccggcgtcgtcaccaacgcccaccgcatcaacgccggccgcccgcccctgctc
cagggcctgccggatttcttcctcttcgcctgcgacgacacggaggccaccgccgagcgc
accgtcgatgtcgcctgttcccgcatcccggccaagttccgcctcgacccccgccgggac
gtacaggtcctcacccccatgcaccgcggccccgccggctcgggggcgttgaacaccctg
ctccagcaacggctcaccccgcatcgggaggggcagccggagcggcgagccggcgggcgg
gtgttccgcatcggcgacaaagtcacccagattcgcaacaactacgacaagggcgaggcg
ggcgtcttcaacggcactctcggcatcgtcacccagctctcgaccgaggagcagacgctg
acggtccgcaccgacgaggacgagagcatcgactacgacttcgacgaactcgacgagctg
gcccacgcctacgccatgaccatccaccgctcgcagggctcggaatacccggcggtcgtc
atcccgctgaccaccagcgcctggatgatgctgcaacgcaacctgctctacaccgccgtc
acccgcgccaaacaactcgtcgtcctggtcggctcccgccgggccctcgccgccgcggtc
cgcaccgtcggcgccggccgtcggcacaccgccctcaaccaccggctggccgccgcaacg
ccctga
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