Salinispora tropica: Strop_1798
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Entry
Strop_1798 CDS
T00504
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
stp
Salinispora tropica
Pathway
stp03030
DNA replication
stp03430
Mismatch repair
stp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
stp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Strop_1798
03430 Mismatch repair
Strop_1798
03440 Homologous recombination
Strop_1798
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stp03032
]
Strop_1798
03400 DNA repair and recombination proteins [BR:
stp03400
]
Strop_1798
Enzymes [BR:
stp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Strop_1798
DNA replication proteins [BR:
stp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Strop_1798
DNA repair and recombination proteins [BR:
stp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Strop_1798
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
ABP54261
UniProt:
A4X5W1
LinkDB
All DBs
Position
2054610..2058143
Genome browser
AA seq
1177 aa
AA seq
DB search
MGDSFAHLHVHTEYSMLDGAARLKDLFAEVNRQGMPAVAMTDHGNMHGANDFYKQAMAAG
VKPILGIEAYVAPESRFHKKRVRWGRPEQKSDDVSGSGGYTHMTIWAKNKVGLHNLFKLT
SRSFTEGFFVKWPRMDTELLAEHSEGLIATTGCPSGEVQTRLRLDQYDEALKAAAKYQDI
FGKENFFLEVMDHGIDIERRVRQELAEISHKLDIPPVVTNDSHYTYQAQSEAHDVLLCVQ
TAANVADPNRFRFDGSGYYIKSADEMRGVDSSELWRAGCRNTLLVAEMVDPAGMFDFRNL
MPRFPVPEGETDESWFRKETFKGLARRFPNGVPETHLKQAEYELGVIIQMGFPSYFLVVA
DFIQWAKGEGIAVGPGRGSAAGSLVAYALGITDLDPLPHGLIFERFLNPERVSMPDVDID
FDERRRGEVIKYVTEKWGEDKVAQIATFGTIKAKAAIKDSARVLGYPYAVGDRITKAMPP
AVMGKDIPLTGIFDPQHSRYAEAGEIRGLYESDPDVKKVIDTARGIEGLIRQTGVHAAGV
IMSAEPIVDHIPLMRRDADGAIITQFDYPTCESLGLLKMDFLGLRNLTIIDDALKNIESN
HGRTVDLLQLPLDDTATYELLSRGDTLGVFQLDGGPMRSLLRTMKPDNFEDISAVLALYR
PGPMGANSHTNYALRKNGLQEITPIHPELAEPLEEILGPTYGLIVYQEQVQRAAQVLAGY
SLGKADLLRRAMGKKKKEVLDKEFVPFRDGMRANDYSDEAIQTLWDILVPFADYAFNKAH
TAGYGLVSYWTGYLKANYPAEYMAALLTSVGDDKDKMALYLSECRRMGIQVLPPDVNTSA
GPFTPVGRDIRFGLAAIRNVGANVVSAIMRCRGEKGAYTDFYDFLSKVEAVVCNKKTIES
LIKAGAFDSLDHSRRGLLAVHADAIDAYADVKRKEAVGQYDLFGAGFADSDAGQSTTVMP
VIAEGEWDKREKLAFEREMLGLYVSDHPLFGLEHVLGAAADTTIAALSEEGTVPDGTVVT
LAGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFPNTYEVIGEYIAEDAIVVVKGRVD
RRDDTPRIMAMDMSIPDVSSNSANKPVTLTIPVTRCTPPLVERLKETLVLHPGDAEVHVK
LLNGSKVTRLRLGPFRVAPTTALMADLKTVLGPANVG
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgggcgattcgttcgcgcatctgcacgtgcacacagagtattcgatgctcgacggcgcg
gcccggttgaaggacttgttcgccgaggtcaaccggcaggggatgccggccgtggcgatg
accgaccacggcaacatgcacggcgcgaacgacttctacaaacaggccatggccgctggc
gtcaagccgatcctggggatcgaggcgtacgtcgcgccggagtcgcggttccacaagaag
cgggtgcgttgggggcggccggagcagaagagcgacgacgtctccggcagcggtgggtac
acccacatgaccatctgggcgaagaacaaggtggggctgcacaacctgttcaagctgacc
agccggtcgttcaccgaggggttcttcgtcaagtggccacggatggacacggagctcctc
gctgagcactccgaggggttgatcgccaccaccggctgtccctccggtgaggtgcagacc
cggctacggctggaccagtacgacgaggcgctgaaggccgccgcgaaataccaggacatc
ttcggtaaggagaacttcttcctggaggtgatggaccacggcatcgacatcgaacgccgg
gttcgtcaggagctggcggagatctcccacaagctggatatcccgccggtggtgaccaac
gactcgcactacacctaccaggcgcagtccgaggcacacgacgtgctgctctgcgtgcag
accgcggcgaacgtcgccgatccgaaccggttccggttcgacggcagcggctactacatc
aagtccgccgacgagatgcgcggcgtcgactcctccgagctgtggcgcgcgggctgccgg
aacaccctgctggtcgcggagatggtcgacccggccgggatgttcgacttccggaacctg
atgccgcgtttcccggtgccggagggggagaccgacgagtcctggttccgcaaggagacg
ttcaaggggctcgcccgccgcttcccgaacggcgtcccggagacccacctcaagcaggcc
gagtatgagctgggcgtcatcatccagatggggttcccgtcctacttcctcgtggtggcc
gacttcatccagtgggccaagggcgaggggatcgccgtgggcccgggccgcggctcggcc
gccggttcactcgtcgcgtacgccctcggtatcaccgacctggatccgttgccgcacggc
ctcatcttcgagcggttcctcaaccccgagcgggtctcgatgccggatgtcgacatcgac
ttcgacgagcgtcggcgcggtgaagtgatcaagtacgtcacggagaagtggggcgaggac
aaggtcgcccagatcgcgaccttcggcacgatcaaggcgaaggccgcgatcaaggactcg
gcgcgggtgctcggctacccgtacgcggtcggtgaccggatcaccaaggcgatgccgccg
gcggtgatgggcaaggacatcccactgaccggcatcttcgacccgcagcactcccggtac
gcggaggccggcgagattcggggtctctacgagtccgacccggatgtcaagaaggtcatc
gacacggcgcgcgggatcgaggggctgatccggcagacgggggtgcacgccgccggggtc
atcatgtccgccgagccgatcgtcgaccacatcccgttgatgcgtcgggacgccgacggg
gcgatcatcacgcagttcgactacccgacctgcgagtcgctcgggctgctgaagatggac
ttcctcggcctgcgcaacctgaccatcatcgacgacgcgctgaagaacatcgagagtaac
cacgggcgcacggtcgacctgctccagctgccgctggacgacacggcgacctacgagctg
ctgtcccggggcgacaccctgggcgtgttccagctcgacggcgggccgatgcggtcgctg
ctgcggacgatgaagccggacaacttcgaggacatctccgcggtcctggcgctgtaccgg
ccgggcccgatgggcgccaactcacacaccaactacgcgctgcgcaagaacggcctccag
gagatcactccgatccacccggagctggccgagccgctggaggagatcctcggccccacc
tacggcctgatcgtctaccaggagcaggtgcagcgcgccgcccaggtcctcgccggctac
agcctcggcaaggccgacctgctgcgccgggcgatgggcaagaagaagaaggaggttctc
gacaaggagttcgtgccgttccgcgacggaatgcgcgccaacgactactccgacgaggcc
atccagaccctgtgggacatcctcgtccccttcgccgactacgccttcaacaaggcccac
accgccgggtacggcctggtgtcgtactggaccggctacctcaaggcgaactatccggcc
gagtacatggcggcgttgctcacctcggtgggcgacgacaaggacaagatggcgctctac
ctgtcggagtgccgccggatgggcatccaggtgctcccgccggatgtgaacacctcggcc
gggccgttcaccccggtcggccgggacatccggttcggtctggccgcgattcgcaacgtc
ggcgcgaacgtggtcagcgcgatcatgcggtgccggggggagaagggcgcctacaccgac
ttctacgacttcctgtccaaggtggaagcggtcgtctgcaacaagaagaccatcgaatcc
ctgatcaaggcgggggcgttcgactcgctcgaccattcccgccggggcctgctcgcggtg
cacgccgacgccatcgacgcgtacgccgacgtcaagcgcaaggaggccgttggccagtac
gacctcttcggcgccggattcgccgacagcgacgccggacagagcaccacggtgatgccg
gtcatcgccgagggggagtgggacaagcgggagaagctcgccttcgagcgcgagatgctc
ggcctctacgtctccgaccatccgctgttcggcctggagcatgtgctcggtgcggcggcc
gacaccaccatcgcggccctctccgaggaaggaacggttccggacgggacggtggtgacc
ctcgcgggcatcctctccggagtgcagcgccgggtcaccaagcagggccgggcgtgggcg
tcggcgacgcttgaggacctggccggcggggtggagacgctgttcttccccaacacctac
gaggtgatcggggagtacattgccgaggacgcgatcgtggtggtcaaggggcgggtcgac
cgccgggacgacacgccgcggatcatggccatggacatgtcgattccggatgtcagcagc
aattcggcgaacaagccggtcacgctcaccatcccggtcacccgctgcacgccgccgttg
gtggagcggctcaaggagaccctggtgctgcaccccggcgacgcggaggtgcacgtcaag
cttctcaacggcagcaaggtgacccggctgcgactcggcccgttccgggtggcgccgacg
accgccctgatggccgacctgaagaccgtcctcggcccggccaacgtgggctga
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