Salinispora tropica: Strop_2399
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Entry
Strop_2399 CDS
T00504
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
stp
Salinispora tropica
Brite
KEGG Orthology (KO) [BR:
stp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
stp03016
]
Strop_2399
Enzymes [BR:
stp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Strop_2399
Transfer RNA biogenesis [BR:
stp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Strop_2399
Prokaryotic type
tRNA splicing ligases
Strop_2399
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ABP54846
UniProt:
A4X7J6
LinkDB
All DBs
Position
complement(2693584..2695002)
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AA seq
472 aa
AA seq
DB search
MDLVEESPYRFRIDRRDPMRVPGVVFAAEALLPEIGADGSLEQVAAVATLPGIVDASFVM
PDVHLGYGFPIGGVAATDVAAGGVVSPGGVGFDISCGVRLLTADLDLAGLRPRLDAVMDG
LAEATPRGAGRGAAWHLAGRSDVDGVLRDGSRYAVQRGFGVERDLARCEDQGALGDADPG
AVSDRAIERGAKQVGSLGSGNHFLEVQAVTEVYDQRVAEVFGLRPGQVCVMIHCGSRGLG
HQICADYVRRMERAMPRYDIQVPDRQLACAPVSSPEGQAYLGAMAAAANYARANRQLLTH
VARLVFRRVTGAGLDVVYDVSHNQAKIETHGVDGERRSLCVHRKGATRALPPGHPDLPAE
LGEVGQPVLIPGSMGTASYVLTGVSGAPAFASTCHGAGRVRSRKQAVRAERGQDPREQLV
AQNIAVRGASRRGLAEEMPTAYKDIDAVVEATEGAGLCRKVARLVPIGVVKG
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
gtggacctggtcgaggagtcgccgtaccgtttccggatcgaccggcgggacccgatgcgg
gttcccggagtggtgttcgcggccgaggcgctgctgccggagatcggggcggacgggtcg
ttggagcaggtcgcggcggtcgccacgctgcccgggatcgttgacgcctcgttcgtcatg
ccggacgtgcatctgggctacggctttccgatcggcggggtggccgccaccgatgtggcg
gcgggcggggtggtgtccccgggcggggtgggcttcgacatctcgtgcggtgttcggctg
ctcacggccgaccttgatctggccgggcttcgtccccggctcgacgccgtcatggatggg
ctggctgaggcgacgccgcgcggggcgggacggggcgcggcgtggcacctggcgggccgc
tcggacgtggacggggtgctgcgcgacgggtcgcggtacgcggtgcagcgcggcttcggc
gttgagcgggacctcgcacgctgcgaggaccagggtgcgctgggcgacgccgacccgggt
gcggtcagcgaccgggccatcgagcgcggcgcgaagcaggtgggcagtctcggttcgggc
aaccacttcctcgaggtgcaggccgtcacggaggtgtacgaccagcgcgtcgccgaggtc
ttcgggctgcggcccggccaggtctgcgtaatgatccactgcggctctcgaggactgggg
caccagatctgcgccgactatgtgcgccggatggagagggccatgccccgctacgacatc
caggtgccggaccggcagcttgcctgcgctccggtctcgtccccggaggggcaggcctat
ctcggcgcgatggcggccgcggccaactacgcccgggcgaaccgccaactactcacccac
gtggcccggttggtctttcggcgggtcaccggcgcaggtctggacgtggtctacgacgtc
tcacacaaccaggcgaagatcgagactcacggtgtggatggcgagcggcgttcgctctgt
gtgcatcgcaagggtgccacccgagcgctacctccggggcaccccgacctgccggcggag
ctgggtgaggtcgggcagccggtactcatccccggttcgatgggcaccgcgtcctacgtg
ctgaccggggtgtccggtgcccccgccttcgcctccacctgtcatggggccgggcgggtg
cgcagccggaagcaggcggtgcgggccgagcgtggccaggatccgcgcgagcagctcgtt
gcgcagaacatcgcggtacgcggtgcttcacggcgaggtctggccgaggagatgccgaca
gcgtacaaggacatcgatgccgtggtcgaggccaccgagggcgctgggctgtgccggaag
gtcgcccggttggtgccgatcggcgtcgtcaagggctga
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