Salinispora tropica: Strop_2411
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Entry
Strop_2411 CDS
T00504
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
stp
Salinispora tropica
Pathway
stp00061
Fatty acid biosynthesis
stp00071
Fatty acid degradation
stp01100
Metabolic pathways
stp01212
Fatty acid metabolism
stp02024
Quorum sensing
stp04146
Peroxisome
Module
stp_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
stp00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Strop_2411
00071 Fatty acid degradation
Strop_2411
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Strop_2411
09145 Cellular community - prokaryotes
02024 Quorum sensing
Strop_2411
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
stp01004
]
Strop_2411
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
stp04147
]
Strop_2411
Enzymes [BR:
stp01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Strop_2411
Lipid biosynthesis proteins [BR:
stp01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Strop_2411
Exosome [BR:
stp04147
]
Exosomal proteins
Exosomal proteins of breast milk
Strop_2411
Exosomal proteins of breast cancer cells
Strop_2411
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
ABP54858
UniProt:
A4X7K8
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All DBs
Position
complement(2708077..2709915)
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AA seq
612 aa
AA seq
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MQEVVVSPVEEIGGVLPGLAEQVWTNARQAPEAVQFVRPAPVSRAWPVRRSVRGGDVPVT
CAQFRDDVHSLARGFLAAGVGHGDRIGLVSRTRYEWTLVDYALWAIGAVSVPVFETASAD
QLGWILSDAGVVGCVVETSDQAELVASRRSDLPALRDVWQIDAGDLTDLAGQGHAVDDAV
VDGRRRRVTGGDMATIVYTSGTTGRPKGCVLTHRSIHCDVSAAVSVLPQLLHPEANTVLF
LPLAHAFARMIQVGVVQTRTTMVHSADIAGVLEQLRRHRPTFVLAVPRVFEKLHSRAQQK
AEGSHRAWLFQLAERVAVRYSRGRDRSWGPNPLLRLARGGFDPLVYRKLRAALGGRCSAA
IVGGAPLGERLGHFFRGAGLLVLEGYGLTEASPALTANTPTTQRIGTVGRPLPGVKIRIA
DDGEILARGDPVFPGYWNNSEATRAVFTQDGWMRTGDLGELDSDGFLRITGRQKEIIVTA
SGQNLAPTPIEEAIRADPLVSQCMLIGDGRPYVAALVTIDPSAWDRWRSEHGRSDDATVA
ELRDDPELCGEIQAAVDRANATVSRAEQVKTFRILPRDLTESDGELTPILKIKKSVVQEH
FSDDVEALYQGH
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggaggtcgtggtctcgccggtggaggagatcggtggggtgctgccggggctggcg
gagcaggtgtggaccaacgcccgccaggccccggaggcggtgcagttcgttcggcccgcg
ccggtgtcccgcgcctggcccgtgcgccggtcggtgcgcggcggtgacgtgccggtgacg
tgcgcccagttccgggacgacgtgcacagcctcgcccgtggcttcctcgcggccggggtg
gggcacggtgatcggatcgggctggtcagccggacccggtacgagtggaccctcgtcgac
tacgccctctgggcgatcggggcggtgtcggtgccggtcttcgagacggccagcgcggac
cagctcgggtggatcctgtcggacgcgggcgtggtgggctgcgtggtggagacgtccgat
caggccgagctggtcgccagtcggcgttcggatctgccggcgttgcgcgacgtctggcag
atcgacgccggtgaccttaccgatctggccggtcaggggcatgcggttgacgacgcggtg
gtcgacggccgtcgccgccgggtgaccggtggggatatggccacgatcgtctacaccagc
ggcacgaccggtcggccaaagggttgtgtgttgacccatcgctcgatccactgtgacgtg
agcgccgcggtctcggtgctgccgcagctgctacaccccgaggcgaacacggtgttgttc
ctgcccctggcccacgcgttcgcccggatgatccaggtaggggtggtgcagacccggacc
accatggtgcacagcgccgacatcgctggcgtgctggagcagctgcgccggcatcggccg
acgtttgtcctggcggtgccccgggtcttcgagaagctacacagccgggcccagcagaag
gccgagggcagtcaccgggcttggctgttccagctcgccgagcgggtggcggtgcggtac
agccgtggccgtgaccgttcgtggggcccgaacccactgctccggctcgcccgaggcggg
ttcgacccgctggtgtaccggaagctgcgggccgccctgggcgggcggtgctccgcggcg
atcgtcggcggcgcgccgctcggcgaacggctggggcacttcttccgcggcgcgggcctg
ctggtgctggaggggtacggactcaccgaggcctccccggcgttgacggcgaacacgcca
acgacacagcggatcggcacggtcggtcgtccgctgcccggcgtgaagatccggatcgcc
gacgatggtgagatcctcgcccgcggcgacccggtctttcctgggtactggaacaactcg
gaggccacccgggcggtgttcacccaggacgggtggatgcgtaccggcgacctcggagag
ctcgactccgacgggttcctacggatcaccgggcggcagaaggagatcatcgtcaccgcg
tccgggcagaacctcgcgcccacgccgatcgaggaggcgatccgtgcggacccgttggtc
agccagtgcatgctgatcggtgacggtcgcccgtacgtcgccgcgctggtcaccatcgac
ccgtcagcctgggatcgctggcgctccgagcatggccgctcggacgacgcgaccgtggcc
gagctgcgagacgacccagagctgtgcggcgagatccaggcggccgtcgaccgtgcgaac
gcgaccgtctcccgggccgagcaggtcaagaccttccgcatcttgccccgggatctcacc
gagtccgacggcgaactcactcctattctcaagatcaaaaaaagtgttgtccaggaacac
ttcagcgatgacgtcgaggccctgtaccagggccactga
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