Salinispora tropica: Strop_3105
Help
Entry
Strop_3105 CDS
T00504
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
stp
Salinispora tropica
Pathway
stp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Strop_3105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stp03019
]
Strop_3105
03400 DNA repair and recombination proteins [BR:
stp03400
]
Strop_3105
Enzymes [BR:
stp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Strop_3105
Messenger RNA biogenesis [BR:
stp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Strop_3105
DNA repair and recombination proteins [BR:
stp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Strop_3105
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
SaeA_1st
DNA_pol_A_exoN
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
ABP55541
UniProt:
A4X9G7
LinkDB
All DBs
Position
3557214..3559055
Genome browser
AA seq
613 aa
AA seq
DB search
MSSPTDQQPAALETLRRVFGYDAFRGFQQEVIEHVTAGGDALVLMPTGGGKSLCYQIPAL
LRDGVAVVVSPLIALMQDQVDALTAVGVRAGFLNSTLDVDARRAVERAFVARELDLLYLA
PEALGTRGVQHLLDQGRISLFAIDEAHCVSQWGHDFRPDYLALSMLHERWPGVPRIALTA
TATSATRAEISTRLQLTSARHFVASFDRPNIQYRIAAKREPKRQLLALLRDEHPGDAGII
YCLSRATVEKTAEFLVDNGVTALPYHAGLDAVTRARHQQRFLREDGVVMVATIAFGMGID
KPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPATAWLAYGLTDVVQQRRLIDTSEGDPAH
RRNLATHLEAMLALCETVRCRRAQLLDYFGETAPACGNCDTCLQPPESWDGTIAAQKLLS
TIYRLDRERSQRFGAGHCVDILLGRATDKIQQHRHDSLTVFGIGTDLSEAEWRGVVRQLL
AEGLLAVEGDYGTLALTDTSAEVLGRRRTVMLRREPARKARPAKPRGAATVVAELTPAAA
EAFERLRAWRAATAKEQGVPAYVIFHDATLRQIATDAPADLADLAKVGGVGEAKLAKYGE
QVLTVLADDPHPA
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcccccaccgaccagcagcccgccgcgttggaaacgctgcggcgtgtcttcggc
tacgacgccttccggggcttccagcaggaggtcatcgagcacgtgacggccggcggggac
gccctggtactgatgccgaccggcggtggcaagtcgctctgctaccagatcccggcgctg
ctgcgcgacggcgtcgcggtggtcgtgtcaccgttgatcgcgctgatgcaggaccaggtt
gacgcgctgaccgcggtcggggtccgagccggcttcctcaactcgacgcttgacgtcgac
gcccgccgcgccgtcgagcgggccttcgtcgccagggagctggatctgctctacctcgct
ccggaggccctgggcacccggggcgtgcagcacctgctcgaccaggggcggatcagcctc
ttcgcgatcgacgaggcgcactgcgtgtcgcagtgggggcacgacttccgcccggactac
ctggccctgtcgatgctgcacgaacgctggccgggggtgcctcggatcgcgttgacggcc
accgcgaccagcgccacccgggccgagatctcgacccggctccagctcacctcggcccgg
cacttcgtcgccagcttcgaccggcccaacatccagtaccgcatcgcggcgaagcgggag
ccgaagcggcaactactggccctgctccgtgacgaacacccgggggacgccggcatcatc
tactgcctgtcccgggccaccgtggagaagaccgcggagtttctggtcgacaacggtgta
accgcgctgccctaccacgccggcctggacgcggtcacccgcgcccggcaccagcagcgc
ttcctgcgggaggacggcgtggtcatggtcgcgacgatcgcgttcgggatgggcatcgac
aagcccgacgtgcggttcgtcgcccaccttgacctaccgaagtcggtggagggctactac
caggagaccggtcgcgccgggcgggacggcctaccggcgacagcctggctcgcctacggc
ctgacggatgtggtgcagcagcgccggctgatcgacacctcggagggggacccggcgcac
cggcgaaatctcgccacccatctggaggcgatgctcgcgctctgtgagacggtccgctgc
cgccgggcgcagctcctggactacttcggcgagaccgcccccgcctgcggcaactgcgac
acctgcctacagccacccgagtcgtgggacggcacgatcgccgcgcagaagctactctcc
acgatctaccggctcgaccgggagcgcagccaacgcttcggtgccgggcactgcgtcgac
atccttctcggccgcgccaccgacaagatccagcagcaccggcacgactccctgacggtc
ttcgggatcggcaccgacctgagcgaggcggagtggcggggggtggtccggcagctgctc
gccgaggggctactggcggtcgagggcgactacggcacccttgccctcaccgacaccagc
gcggaggtgttgggccgacgtcgcaccgtcatgctgcgccgcgagccggcccggaaggcc
cgaccggcgaagccacgcggcgcggccaccgtggtcgccgagctgacgccggccgccgcc
gaggccttcgaacggctacgcgcctggcgggccgccaccgccaaggagcagggggtgccg
gcgtacgtgatcttccacgacgccacgctgcgacagatcgccaccgacgcccccgccgac
ctggccgacctggccaaggtcggcggcgtcggtgaggcgaagctggcgaagtacggcgag
caggtgctgaccgtactcgccgacgacccccaccctgcttga
DBGET
integrated database retrieval system
