Salinispora tropica: Strop_3646
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Entry
Strop_3646 CDS
T00504
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
stp
Salinispora tropica
Pathway
stp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Strop_3646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stp03021
]
Strop_3646
03019 Messenger RNA biogenesis [BR:
stp03019
]
Strop_3646
Transcription machinery [BR:
stp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Strop_3646
Messenger RNA biogenesis [BR:
stp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Strop_3646
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
VWA_2
NACHT
Motif
Other DBs
NCBI-ProteinID:
ABP56077
UniProt:
A4XAX8
LinkDB
All DBs
Position
complement(4173922..4175949)
Genome browser
AA seq
675 aa
AA seq
DB search
MLLPELQSLAASLGISGTARMRKGELISAITERQGGGAATGTPRPRAEVAAAAAPARGEV
HAEVRESGERAETESRPAEQPTTTPTTGRARGRRSRAVSEAGEARAETRPEEAEAGERRE
RGEGRGGRDRAERGERAERGERAERGERAERGERAERGERAERGERAERGERAERGERAE
RGERAERGERAERGERAERGERAERGERGERGERAERGERAERGERGDRGERAERGERGD
RGERAERGDRNDRGQRDNDGEEENEGGGRRGRRSRFRDRRRGRGDRDGDGGREPQVSEDD
VLVPVAGIIDVLDNYAFVRTTGYLAGPNDVYVSMSQIKRYGLRRGDAITGAVRAAREGEQ
RRDKYNPLVRLDTINGMEPEEAKRRPEFYRLTPLYPQERLRLESEPHILTTRVIDLVMPI
GKGQRALIVSPPKAGKTMVLQAIANAITHNNPECHLMVVLVDERPEEVTDMQRSVKGEVV
AATFDRPPQDHTTVAELAIERAKRLVELGHDVVVLLDSVTRLGRSYNLAAPASGRIMSGG
IDSTALYPPKRFLGAARNIENGGSLTILATALVETGSTADTVIFEEFKGTGNAELKLDRK
IADKRTFPAIDIHPSGTRKEEILLAPEELAIVHKLRKVLHALDSQAALDLLLDRLKKSRT
NIEFLMQIAKSTPGE
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgccggagcttcagagcctggccgcgtcgctcggcatctcgggcacggctcgc
atgcgcaagggtgagctgatcagcgcgatcaccgagcgccagggtggcggggcagccacc
ggaacccctcgaccgcgggccgaggttgcggctgccgcggcccccgcccggggggaggtc
cacgcggaggtccgggagtcgggcgagcgggcggagaccgagtcgcgtcccgccgagcag
ccgacgaccaccccgaccaccggccgggcccgtggccggcgtagccgtgcggtcagtgag
gccggtgaggcccgcgctgagacgcgaccggaggaggccgaggccggcgaacgccgggag
cgtggtgaaggccgcggtggccgggaccgtgctgagcgcggcgagcgtgctgagcgtggc
gagcgtgctgagcggggcgagcgtgctgagcgtggcgagcgtgctgagcggggcgagcgt
gctgagcggggcgagcgtgctgagcggggcgagcgtgctgagcggggcgagcgtgctgag
cgtggcgagcgtgctgagcggggcgagcgtgctgagcggggcgagcgtgctgagcggggc
gagcgtgctgagcgtggcgagcgcggtgagcgtggcgagcgtgctgagcggggcgagcgt
gctgagcggggcgagcgcggtgaccgtggcgagcgtgctgagcgtggcgagcgcggtgac
cgtggcgagcgtgctgagcggggcgaccggaacgaccgtggccagcgtgacaacgacggc
gaggaggagaacgagggcggcggtcggcgtggccggcgcagccgcttccgggatcgtcgg
cgcggccgtggcgaccgggacggcgacggtgggcgggagccccaggtcagcgaggacgat
gtcctcgtcccggtagcgggcatcatcgatgtgctcgacaactacgccttcgtccggacc
accggctatctggccgggccgaatgacgtttacgtctctatgtcccagattaagcggtac
ggtctgcggcgtggtgacgcgatcaccggtgccgtccgcgcggcgcgggagggcgagcag
cggcgggacaagtacaacccgctggtccggctggacaccatcaacgggatggagccggag
gaagcgaagcgccggccggagttctatcgactcaccccgctctacccgcaggagcggctg
cggctggagagcgagccgcacatcctcaccactcgggtgatcgacctggtgatgccgatc
ggcaagggccagcgggcgcttatcgtttcgccgcccaaggccggcaagacgatggtgttg
caggcgatcgcgaacgcgatcacccacaacaacccggagtgccacctgatggtggtgttg
gtggacgagcgtccagaagaggtcaccgacatgcagcggtcggtgaagggcgaggtcgtc
gcggcaaccttcgaccggccgccgcaggaccacaccaccgtcgccgagttggcgattgag
cgggcgaagcgcctggtcgagctgggccacgacgtggtcgtgctgctggactcggtgacg
cggcttggtcggtcgtacaacctggcggcgccggccagcggccggatcatgtcgggtggt
atcgactccaccgcgttgtacccgccgaagcggttcctgggtgcggcccgcaacatcgaa
aacggtggttcgctgaccatcctcgccaccgcgctggtggagaccggttcgacggcggac
acggtcattttcgaggagttcaagggcaccggtaacgcggagctgaagctggatcggaag
atcgccgacaagcggaccttcccggccatcgacatccacccgtccggtacgcgtaaggag
gagatcctgctcgcgccggaggagctggccatcgtccacaagctccggaaggtgctgcac
gcgctggactcacaggccgcgctggacctgctgctggaccggctcaagaagtcgcggacc
aacatcgagttcctgatgcagattgcgaagtcgacgccaggggagtga
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