Streptomyces sp. PBH53: QR97_00010
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Entry
QR97_00010 CDS
T10303
Name
(GenBank) ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
stpb Streptomyces sp. PBH53
Pathway
stpb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stpb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QR97_00010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stpb03019
]
QR97_00010
Messenger RNA biogenesis [BR:
stpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QR97_00010
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AKN68422
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Position
complement(2296..3981)
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AA seq
561 aa
AA seq
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MSHPHPELGPPPPLPEGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFSSIRNRLDDIEGIVLTHGHEDHIGGVPFLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEGNRERIGPFDCEFIAVNHSIPDALAVAIRTPAGMAVHTGDFKMDQLP
LDNRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFTPHERDISNVLRQVFAGARKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPAGLVVDVKTLDDLPD
HEVVLVCTGSQGEPMAALSRMANRDHQIRIVQGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICRPRNLMPVHGEWRHLRANAELGAMTGVPHD
RIVIAEDGVAVDLVDGKAKISGKVQAGYVYVDGLSVGDVGEPALKDRKILGDEGIISVFV
VMDASTGKITGGPHVQARGSGIEDSAFTDVIPKITEVLERSAQDGVVEPHQLQQLIRRTL
GKWVSETYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgaactcggcccgccgccgccgctccccgagggcggcctgcgg
gtcaccccgctcggcggcctcggcgagatcggccggaacatgacggtcttcgagtacggc
ggtcgcctgctgatcgtcgactgcggagtgctcttcccggaggaggagcagcccggaatc
gacctgatcctgccggacttctcgtccatccggaaccgcctggacgacatcgagggcatc
gtcctcacgcacggacacgaggaccacatcggcggcgtcccgttcctgctccgcgagaag
ccggacatcccgctgatcggctccaagctcaccctcgccctgatcgaggccaagctccag
gagcaccggatccgtccgtacacgctggaggtggcggaggggaaccgggagcgcatcggc
cccttcgactgcgagttcatcgccgtcaaccactccatcccggacgccctggccgtcgcc
atccgtacgcccgccggcatggcggtgcacaccggcgacttcaagatggaccagctcccg
ctggacaaccgcctcaccgacctgcacgccttcgcgcggctgagcgaggagggcatcgac
cttctcctcagcgactccacgaacgccgaggtcccggggttcaccccgcacgagcgcgac
atctccaacgtcctgcggcaggtcttcgccggcgcccgcaagcggatcatcgtggcgagc
ttcgccagccacgtccaccgcatccagcagattctggacgcggcccacgagtacggccgc
cgggtcgccttcgtcggccggtccatggtccgcaacatgggcatcgcccgcgacctgggc
tatctgaaggtcccggcgggcctggtggtcgacgtcaagacgctggacgacctgcccgac
cacgaggtggtcctggtctgcacgggctcccagggcgagccgatggcagccctgtcccgc
atggccaaccgcgaccaccagatccgcatcgtccagggcgacaccgtcatcctcgcgtcc
tcgctgatcccggggaacgagaacgcggtctaccgcgtgatcaacggcctgacccgctgg
ggcgccaacgtcgtccacaagggcaacgccaaggtgcacgtctccggtcatgcgtccgcg
ggcgagctgctgtacttctacaacatctgccgcccgcggaacctgatgccggtccacggc
gaatggcgccacctgcgggccaacgccgagctgggcgccatgacgggcgtcccgcacgac
cggatcgtcatcgccgaggacggcgtggcggtggacctggtcgacggcaaggccaagatc
tccggcaaggtccaggccggttacgtctacgtcgacggcctctcggtcggcgacgtcggc
gagccggcgctgaaggaccgcaagatcctcggcgacgagggcatcatctcggtcttcgtg
gtcatggacgcctccaccgggaagatcacaggcggcccgcacgtccaggcgcgcggctcc
ggcatcgaggactcggccttcaccgacgtgatcccgaagatcacggaggtcctggagcgg
tccgcccaggacggcgtcgtggagccccaccagctccagcagctcatccgccggaccctc
ggcaagtgggtctcggagacctatcgccgcaggccgatgatcctcccggtggtcgtggag
gtctga
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