KEGG   Streptomyces sp. PBH53: QR97_00010
Entry
QR97_00010        CDS       T10303                                 
Name
(GenBank) ribonuclease
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
stpb  Streptomyces sp. PBH53
Pathway
stpb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:stpb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    QR97_00010
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:stpb03019]
    QR97_00010
Messenger RNA biogenesis [BR:stpb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     QR97_00010
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C RMMBL Lactamase_B Lactamase_B_2 Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: AKN68422
LinkDB
Position
complement(2296..3981)
AA seq 561 aa
MSHPHPELGPPPPLPEGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFSSIRNRLDDIEGIVLTHGHEDHIGGVPFLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEGNRERIGPFDCEFIAVNHSIPDALAVAIRTPAGMAVHTGDFKMDQLP
LDNRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFTPHERDISNVLRQVFAGARKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPAGLVVDVKTLDDLPD
HEVVLVCTGSQGEPMAALSRMANRDHQIRIVQGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICRPRNLMPVHGEWRHLRANAELGAMTGVPHD
RIVIAEDGVAVDLVDGKAKISGKVQAGYVYVDGLSVGDVGEPALKDRKILGDEGIISVFV
VMDASTGKITGGPHVQARGSGIEDSAFTDVIPKITEVLERSAQDGVVEPHQLQQLIRRTL
GKWVSETYRRRPMILPVVVEV
NT seq 1686 nt   +upstreamnt  +downstreamnt
ttgagtcatccgcatcctgaactcggcccgccgccgccgctccccgagggcggcctgcgg
gtcaccccgctcggcggcctcggcgagatcggccggaacatgacggtcttcgagtacggc
ggtcgcctgctgatcgtcgactgcggagtgctcttcccggaggaggagcagcccggaatc
gacctgatcctgccggacttctcgtccatccggaaccgcctggacgacatcgagggcatc
gtcctcacgcacggacacgaggaccacatcggcggcgtcccgttcctgctccgcgagaag
ccggacatcccgctgatcggctccaagctcaccctcgccctgatcgaggccaagctccag
gagcaccggatccgtccgtacacgctggaggtggcggaggggaaccgggagcgcatcggc
cccttcgactgcgagttcatcgccgtcaaccactccatcccggacgccctggccgtcgcc
atccgtacgcccgccggcatggcggtgcacaccggcgacttcaagatggaccagctcccg
ctggacaaccgcctcaccgacctgcacgccttcgcgcggctgagcgaggagggcatcgac
cttctcctcagcgactccacgaacgccgaggtcccggggttcaccccgcacgagcgcgac
atctccaacgtcctgcggcaggtcttcgccggcgcccgcaagcggatcatcgtggcgagc
ttcgccagccacgtccaccgcatccagcagattctggacgcggcccacgagtacggccgc
cgggtcgccttcgtcggccggtccatggtccgcaacatgggcatcgcccgcgacctgggc
tatctgaaggtcccggcgggcctggtggtcgacgtcaagacgctggacgacctgcccgac
cacgaggtggtcctggtctgcacgggctcccagggcgagccgatggcagccctgtcccgc
atggccaaccgcgaccaccagatccgcatcgtccagggcgacaccgtcatcctcgcgtcc
tcgctgatcccggggaacgagaacgcggtctaccgcgtgatcaacggcctgacccgctgg
ggcgccaacgtcgtccacaagggcaacgccaaggtgcacgtctccggtcatgcgtccgcg
ggcgagctgctgtacttctacaacatctgccgcccgcggaacctgatgccggtccacggc
gaatggcgccacctgcgggccaacgccgagctgggcgccatgacgggcgtcccgcacgac
cggatcgtcatcgccgaggacggcgtggcggtggacctggtcgacggcaaggccaagatc
tccggcaaggtccaggccggttacgtctacgtcgacggcctctcggtcggcgacgtcggc
gagccggcgctgaaggaccgcaagatcctcggcgacgagggcatcatctcggtcttcgtg
gtcatggacgcctccaccgggaagatcacaggcggcccgcacgtccaggcgcgcggctcc
ggcatcgaggactcggccttcaccgacgtgatcccgaagatcacggaggtcctggagcgg
tccgcccaggacggcgtcgtggagccccaccagctccagcagctcatccgccggaccctc
ggcaagtgggtctcggagacctatcgccgcaggccgatgatcctcccggtggtcgtggag
gtctga

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