Streptomyces sp. PBH53: QR97_17775
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Entry
QR97_17775 CDS
T10303
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
stpb Streptomyces sp. PBH53
Brite
KEGG Orthology (KO) [BR:
stpb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stpb03019
]
QR97_17775
Enzymes [BR:
stpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QR97_17775
Messenger RNA biogenesis [BR:
stpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QR97_17775
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
APHB_HrpA
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
WHD_HA2
AAA_22
nSTAND3
SLFN-g3_helicase
T2SSE
NACHT
nSTAND_NTPase5
AAA_16
AAA_25
ResIII
PhoH
AAA_30
TsaE
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AKN71402
LinkDB
All DBs
Position
4077693..4081637
Genome browser
AA seq
1314 aa
AA seq
DB search
MSTHPAPALGTLASRLTELSLRDAHRLGRRMEGARKIRKPEARAAVLAEIDTEIGRAADR
MAERRSRVPAVTYPEQLPVSQKKDEIAAAIRDHQVVIVAGETGSGKTTQIPKICLELGRG
VRGMIGHTQPRRIAARTVAERVAEELRTPLGEAVGWKVRFTDQVNPDATFIKLMTDGILL
AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSR
HFGDAPIIEVSGRTYPVEVRYRPLLEEDSDDADRDQITAITDAVEELMAEGQGDILVFLS
GEREIRDTADALTKKNYRFTEILPLYARLSHAEQHRVFQPHTGRRIVLATNVAETSLTVP
GIKYVIDPGFARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDGICIRLYSEEDFL
ARPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELGALDPA
QKDPRKRLTDTGRKLAQLPVDPRLARMVLEADKNGCVREVMVIAAALSIQDPRERPADKQ
AQADQQHARFKDETSDFLAYLNLWRYVREQQKERGSSSFRRMCKQEYLNFLRIREWQDIY
TQLRTVAKQLGIHLNEDDAPADRVHVSLLAGLLSHIGMKDVKDGNKNEYLGARNAKFAIF
PGSALFRKQPKFLMSAELVETSRLWARVNAKIEPEWVEPLAGHLLKRTYSEPHWEKDQAA
VMAYEKVTLYGVPIVAQRKVNYGRIDPETSRELFIRNALVEGDWRTHHKFFADNRKLLSE
VEELEHRARRRDIVVDDETLFDFYDQRVPEHVVSGAHFDSWWKRKRHEQPDYLDFEREML
IRESAEAVTKADYPDSWRQGQLKFRVTYQFEPGADADGVTVHIPLQVLNQVTDEGFDWQI
PGLREELVTELIRSLPKPIRRNYVPAPNYAKAFLERAVPLQEPLTVTMARELKRMVGVPF
EADDFDWAKVPEHLKITFRIVDERRRKLAEDKDLEALKLRLKPKARKALSQAAAATASRE
GGESLERKGLTDWTLGTLTRVFETRRAGQPVKAYPALVDDGDTVSVRLFDTEAEQAEAMW
KGTRRLILRNIPVNPAKFASEKLTNAQKLALSANPHGSIQALFDDCAMAAADKLIADFGG
PAWDEESYRKLYDKVRAEIVDTTVRTVAQVQQVLAAWQACERRLKAVRSPALLANLTDVR
KQLDALVKPGFVTWAGIRRLPDLMRYLVAADRRLQQMPTNVQRDTTRMEKVHEMQDEYAW
LLEQLPQGRPVPAAVLDIRWMIEELRVSYFAHALGTAYPVSDKRIVKAIDAAVP
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgcatcccgcccccgccctcggcaccctcgcctcccgcctgaccgagctgtcg
ctgcgcgacgcgcaccggctcgggcggcggatggagggcgcgcgcaagatccgtaagccc
gaggcccgcgccgccgtcctcgccgagatcgacaccgagatcggccgtgccgcggaccgg
atggccgagcgccgctcgcgcgtgccggccgtcacctaccccgagcagctgccggtcagc
cagaagaaggacgagatcgcggcggccatccgcgatcaccaggtcgtcatcgtggccggt
gagaccggttccggcaagaccacccagatcccgaagatctgcctggagctgggccggggc
gtgcgcggcatgatcgggcacacccagccgcgccggatcgccgcccggaccgtcgccgag
cgggtcgcggaggagctgcggacgcccctcggcgaggccgtcggctggaaggtccgcttc
accgaccaggtgaacccggacgccaccttcatcaagctgatgacggacggcatcctgctc
gccgagatccagaccgaccgcgagctgcgcgcctacgacacgatcatcatcgacgaggcc
cacgagcggtccctcaacatcgacttcctgctgggctacctcgcccagctgctgccgaag
cgcccggacctgaaggtcgtcatcacctcggcgaccatcgaccccgagcgcttctcccgg
cacttcggcgacgccccgatcatcgaggtcagcgggcgcacgtacccggtggaggtgcgc
taccggccgctcctcgaagaggactccgacgacgccgaccgcgaccagatcaccgcgatc
accgacgccgtcgaggagctgatggcggagggccagggcgacatcctggtcttcctctcc
ggcgagcgggagatccgggacaccgcggacgccctcaccaagaagaactaccggttcacc
gagatcctgccgctgtacgcccggctctcgcacgccgagcagcaccgggtcttccagccg
cacaccgggcgcaggatcgttctggcgaccaacgtcgccgagacctcgctcaccgtcccc
ggcatcaagtacgtcatcgatcccggcttcgcccggatctcccgctacagccaccgcacc
aaggtccagcggctgcccatcgaaccggtctcgcaggccagcgccaaccagcgcaagggc
cgctgcggccgtacctccgacggcatctgcatccggctgtacagcgaggaggacttcctc
gcccggccggagttcaccgacgcggagatcctgcgcaccaacctggcctccgtcatcctc
cagatgaccgcggccggcctcggcgacatcgagaagttccccttcatcgacccgccggac
caccgcaacatccgcgacggcgtgcagctgctccaggagctgggcgcgctcgaccccgcc
cagaaggacccgcgcaagcggctcaccgacaccggccgcaagctcgcccagctgcccgtc
gacccccgcctggcccggatggtcctggaggccgacaagaacggctgtgtccgcgaggtc
atggtgatcgccgccgcgctgtccatccaggacccgcgcgagcgccccgccgacaagcag
gcccaggccgaccagcagcacgcccggttcaaggacgagaccagcgacttcctcgcctat
ctgaacctgtggcgctacgtccgcgagcagcagaaggagcgcggctccagctccttccgc
cggatgtgcaagcaggagtacctgaacttcctgcgcatccgcgaatggcaggacatctac
acccagctgcgcacggtcgccaaacagctgggcatccacctcaacgaggacgacgccccc
gccgaccgcgtccacgtctccctgctcgccggcctcctctcccacatcgggatgaaggac
gtgaaggacggcaacaagaacgagtacctgggcgcccgcaacgccaagttcgcgatcttc
ccgggctcggcgctgttccggaagcagccgaagttcctgatgtcggccgaactggtggag
accagccgcctgtgggcgcgggtgaacgccaagatcgagccggagtgggtcgaaccgctg
gccggacacctcctgaagcggacgtacagcgaaccgcactgggagaaggaccaggccgcc
gtgatggcgtacgagaaggtcacgctgtacggcgtcccgatcgtcgcccagcggaaggtg
aactacggccgcatcgacccggagaccagccgcgagctgttcatccgcaacgcgctcgtg
gagggcgactggcgcacgcaccacaagttcttcgcggacaaccgcaagctgctcagcgag
gtcgaggagctggagcaccgcgcccggcgccgggacatcgtcgtggacgacgagaccctc
ttcgacttctacgaccagcgggtgcccgaacacgtcgtctccggtgcccacttcgactcc
tggtggaagcggaagcggcacgagcagccggactacctggacttcgagcgggagatgctc
atccgggagtcggcggaggcggtcaccaaggccgactatcccgacagctggcgccagggg
cagctgaagttccgggtgacgtaccagttcgagcccggcgcggacgccgacggtgtgacg
gtccacatcccgctccaggtcctcaaccaggtcacggacgagggcttcgactggcagatc
ccgggcctgcgcgaggagttggtgacggagctgatccgctccctgccgaagccgatccgc
cgcaactacgtaccggcgccgaactacgcgaaggcgttcctggagagggcggtgcccctc
caggagccgctgaccgtcacgatggcccgcgagctgaagcggatggtcggcgtgccgttc
gaggcggacgacttcgactgggcgaaggtccccgagcatctgaagatcaccttccggatc
gtcgacgagcggcgccggaaactggccgaggacaaggacctcgaggcgctgaagctgcgg
ctgaagcccaaggcgcgcaaggcgctgtcccaggccgcggcggcgaccgcgtcccgggag
ggcggcgagtccctggagcgcaagggcctgaccgactggaccctcggcaccctcacccgg
gtcttcgagacgcgccgggccggccagccggtcaaggcgtacccggcgctcgtcgacgac
ggcgacacggtctcggtccgcctcttcgacaccgaggcggagcaggccgaggcgatgtgg
aagggcacccgccgcctgatcctgcgcaacatcccggtcaatccggcgaagttcgcgtcc
gagaagctgacgaacgcccagaagctggccctgtccgccaatccgcacggctcgatccag
gccctgttcgacgactgcgcgatggccgcggcggacaagctgatcgcggacttcggcggg
ccggcgtgggacgaggagtcgtaccgcaagctgtacgacaaggtgcgcgcggagatcgtg
gacaccacggtccgtacggtcgcccaggtgcagcaggtgctggccgcctggcaggcctgt
gagcgccgcctgaaggccgtgcggagccccgccctgctggcgaacctcacggacgtccgc
aagcagctggacgccctcgtgaagcccggtttcgtgacgtgggcgggcatacgccggctg
cccgacctgatgcgctacctggtggccgccgaccggcgcctgcagcagatgccgaccaac
gtccagcgggacaccacgcgcatggagaaggtccacgagatgcaggacgagtacgcctgg
ctcctggagcagcttccgcagggccgcccggtaccggccgccgtcctggacatccgctgg
atgatcgaggagctgcgggtcagctacttcgcccacgcgctgggcacggcgtacccggtc
tcggacaagcggatcgtgaaggcgatcgacgcggccgtcccgtaa
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