Streptomyces sp. PBH53: QR97_23980
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Entry
QR97_23980 CDS
T10303
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
stpb Streptomyces sp. PBH53
Pathway
stpb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
stpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QR97_23980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stpb03400
]
QR97_23980
Enzymes [BR:
stpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QR97_23980
DNA repair and recombination proteins [BR:
stpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QR97_23980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
AAA_22
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AKN72422
UniProt:
A0A0H4C8V5
LinkDB
All DBs
Position
complement(5539418..5542948)
Genome browser
AA seq
1176 aa
AA seq
DB search
MSLHGLLDAVVKDPALAEAISAAADGNRPHVDLVGPPAARPFAVAALAREAGRPVLAVTA
TGREAEDLAAALRSLLPEQGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPSPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVALRTGQSADLNDVVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTEDVRARARALAEDHPELGELLNKIAEGIAVEGMESLAPVLVDDMELLLDVLPRGAMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWSLADVRDRARELDMM
WWSVSPFAADLELEADTLKLGMHAPETYRGDTARALADTKGWLADGWRAVFVTEGHGPAA
RTVEVLGGEGIAARLDSDLGELSPSVVHVSCGSIEYGFVDPALRLAVLTETDLSGQRTAG
RDGTRMPARRRKTIDPLTLEPGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGADTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYGQFPVNVRALSRFQTDTEAKA
VLEGLKDGSVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSESALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDTFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLETGE
VEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIASANSEEDIKAVREELTDRYGKL
PEPVENLLLVAGLRMLARACGVGEIVLQGTNIRFAPVELRESQELRLKRLYPGTVIKPAV
HQVLVPRPKTAKVGGKPLVGRELLAWVGEFLTSILG
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgcggtcgtcaaggaccccgccctcgcggaagcgatc
agcgcggcggcggacggcaaccgcccgcacgtcgacctcgtcggccccccggccgcccgc
cccttcgcggtcgccgccctggcccgcgaggccggccgcccggtccttgcggtcacggcg
acgggccgcgaggccgaggacctggccgccgccctgcgctccctgctgcccgaacagggc
gtcgtggagtacccctcctgggagaccctcccgcacgagcggctcagcccgcgcagcgac
accgtcggccgccgcctcgccgtcctgcgccgcctggcccaccccagcccggacgacccc
gagaccggccccgtctccgtcgtcgtggcccccgtgcgctccgtgctccagccgcaggtc
aagggcctcggcgacctggagccggtggccctgaggaccggccagagcgccgatctgaac
gacgtcgtcgaagccctcgccgccgccgcgtacgcgcgcgtggagctggtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctcgacgtgttcccgcccaccgaggaacacccc
ctgcgcatcgagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctcgaagtcgccgagcacggcctgtgggcgcctccgtgccgcgagctgctg
ctgaccgaggacgtccgtgcacgcgcgcgtgccctcgccgaggaccacccggagctgggc
gaactcctgaacaagatcgccgagggcatcgcggtggagggcatggagtccctcgccccg
gtcctggtggacgacatggagctgctgctcgacgtgctgcccaggggcgccatggccgtc
gtctgcgaccccgagcgggtccgcacccgcgccgccgacctcgtcgccaccagccaggag
ttcctccaggcgtcctgggcggccaccgcgggcggcggcgaggcccccatcgacgtcggc
gcggcctccctgtggtccctcgccgacgtccgcgaccgcgcgcgcgagctggacatgatg
tggtggtccgtctcgccgttcgccgccgacctggaactggaggcggacaccctcaagctc
ggcatgcacgcccccgagacctaccgcggcgacaccgcgcgggccctcgccgacaccaag
ggctggctcgccgacggctggcgcgcggtcttcgtcaccgagggccacggcccggccgcc
cgcacggtcgaggtgctcggcggcgagggcatcgccgcccgcctcgactccgacctcggc
gagctgagcccgtcggtggtgcacgtctcctgcgggtcgatcgagtacggcttcgtggac
ccggcgctgaggctcgccgtcctcaccgagaccgacctgtccggccagcgcaccgccggc
cgcgacggcacccgcatgccggcccgccgccgcaagaccatcgacccgctcaccctggag
ccgggcgactacatcgtccacgaacagcacggcgtcggccgctacatcgagatggtgcag
cgcaccgtgcagggcgccacccgcgagtacctggtcgtcgagtacgcccccgccaagcgc
ggccagcccggcgaccggctgtacatcccgaccgaccagctggagcagatcaccaagtac
gtcggcggcgaggcgcccaccctgcaccgcctcggcggcgcggactggacgaagaccaag
gcccgcgcgaagaaggccgtcaaggagatcgccgccgacctgatcaagctgtacagcgcg
cgcatggccgcccccggccacgccttcggcgccgacaccccctggcagcgcgagctggag
gacgccttcccctacgccgagaccccggaccagctcaccaccatcgccgaggtcaaggag
gacatggagaagtcggtccccatggaccgcctgatctgcggcgacgtcggctacggcaag
accgagatcgccgtgcgggccgccttcaaggccgtacaggacggcaagcaggtggccgtc
ctcgtgcccacgaccctgctggtgcagcagcacttcggcacgttctccgagcggtacggg
cagttcccggtgaacgtccgggcgctgtcccggttccagaccgacaccgaggccaaggcg
gtcctggaggggctgaaggacggctcggtggacgtcgtcatcggcacccaccgcctgttc
tcctccgagaccaagttcaaggacctcggcctggtcatcgtggacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctccgcgccaacgtcgacgtcctgaccatg
tccgcgaccccgatcccgcgcaccctggagatggcggtcaccggcatccgcgagatgtcc
acgatcaccacgcccccggaggagcgccacccggtgctcaccttcgtcgggccgtacgag
gagaagcagatcggcgccgccatccgccgtgagctgctgcgcgagggccaggtcttctac
atccacaaccgcgtcgagtccatcgaccgcgcggcggccaggctgcgcgagatcgtcccc
gaggcgcgcatcgcgacggcccacggccagatgtccgagtcggcgctggagcaggtcgtg
gtcgacttctgggagaagaagttcgacgtgctggtgtcgaccacgatcgtggagtccggc
atcgacatctccaacgccaacacgctgatcgtggagcgcggcgacaccttcggcctgtcc
cagctgcaccagctgcgcggccgggtcggccggggccgcgagcgcggctacgcgtacttc
ctgtacccgccggagaagccgctgaccgagaccgcgcacgagcgtctcgcgacgatcgcc
cagcacacggagatgggcgcgggcatgtacgtcgcgatgaaggacctggagatccgcggc
gccggcaacctgctcggcggcgagcagtccgggcacatcgccggcgtcggcttcgacctg
tacgtccgcatggtcggcgaggcggtcgccgactaccggcggcagctggagaccggcgag
gtcgaggaggagccgccgctcgaggtcaagatcgagctgccggtcgacgcgcacgtcccg
cacgactacgcccccggcgagcggctgcgcctccaggcgtaccgctcgatcgcctccgcc
aactcggaggaggacatcaaggccgtccgcgaggaactcaccgaccgctacggcaagctg
cccgagccggtggagaacctgctgctggtggccgggctgcggatgctcgcgcgcgcgtgc
ggcgtcggcgagatcgtcctgcagggcaccaacatccgcttcgcgccggtggagctgcgc
gagtcgcaggagctgcggctcaagcggctgtacccgggcacggtcatcaagccggccgtg
caccaggtgctggtcccgcgcccgaagaccgcgaaggtgggcggcaagccgctggtcggc
cgcgaactgctggcctgggtcggcgagttcctcacctcgatcctgggctag
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