Streptomyces sp. PBH53: QR97_25105
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Entry
QR97_25105 CDS
T10303
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
stpb Streptomyces sp. PBH53
Pathway
stpb00040
Pentose and glucuronate interconversions
stpb01100
Metabolic pathways
stpb02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
stpb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
QR97_25105
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
QR97_25105
Enzymes [BR:
stpb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
QR97_25105
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GFIT
Motif
Pfam:
Pectate_lyase_4
Fil_haemagg_2
Motif
Other DBs
NCBI-ProteinID:
AKN72610
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Position
5796389..5797723
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AA seq
444 aa
AA seq
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MRTQRCHGRVIAVAAGCTALVLAVTGTASGSGSASAQSGARAGLDRQVLPARDGWAAYGT
GTTGGAAADSAHVYTVTTWEQFKAALADGGSAPRIVRVKGMIDADGPGCASFAVPGYDFG
AYLKTYDPAVWGRTENLDAEPDGSPEGLRRASAARQAAFVKAAVPADTTIVGIGRDAGFQ
GASLQIKGVDNVIVRNLTFESPLDCFPQWDPTDTADGNWNSEYDSAVVHGSTHVWLDHNT
FTDGEHPDSTLPSYYGRLYQQHDGELDIVKGADYVTASWNVFEDHDKTILVGNSDSASTA
AVDRGHLKATFHHNLFRNLVERAPRIRFGQVDSYNNHVVAGAGHSYTYGIGMESQLVAEH
NAFTLPDGVPAGTILKKWKDAPVTAADNHVNGRPTDLIAVHNAQVPGEILRSGAGWTPVL
RTRVDRPQAVPGLVGHRAGAGRLR
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
gtgcgtacacagagatgtcatggccgtgtcatagcagtggcggccggctgcacggccctc
gtcctcgccgtcaccggtaccgcctccggctccggctccgcttccgcgcagtccggtgcc
cgcgccggcctcgaccggcaggtgctgcccgcccgggacggctgggcggcgtacggcacc
gggacgaccggcggggccgccgccgactccgcgcacgtgtacaccgtcaccacctgggag
cagttcaaggccgccctcgcggacggcggcagcgcgccccggatcgtccgggtgaagggc
atgatcgacgccgacgggccgggctgcgcctccttcgccgtgcccgggtacgacttcggc
gcctacctgaagacctacgacccggcggtgtggggccgtaccgagaacctcgacgccgag
cccgacggcagccccgaggggctgcgccgcgcctccgccgcgcgccaggccgccttcgtc
aaggccgccgtcccggccgacacgaccatcgtcggcatcggccgcgacgccggcttccag
ggcgccagcctgcagatcaagggcgtcgacaacgtcatcgtccgcaacctgaccttcgag
agccccctcgactgcttcccgcagtgggacccgaccgacaccgccgacggcaactggaac
tccgagtacgacagcgccgtcgtccacggctcgacccatgtgtggctggaccacaacacc
ttcaccgacggcgagcacccggacagcaccctgccgtcgtactacggccggctctaccag
cagcacgacggcgagctggacatcgtcaagggcgccgactacgtcaccgcctcctggaac
gtcttcgaggaccacgacaagacgatcctcgtcggcaacagcgacagcgcgtccacggcc
gccgtcgaccgcgggcatctgaaggccaccttccaccacaacctgttccggaacctggtc
gagcgcgccccgcggatccgcttcgggcaggtggactcgtacaacaaccacgtcgtcgcc
ggcgccggtcactcctacacctacggcatcggcatggagtcgcagctggtcgccgagcac
aacgcgttcaccctgccggacggtgtcccggcgggcacgatcctgaagaagtggaaggac
gcgccggtcaccgccgccgacaaccacgtcaacggcaggccgacggacctcatcgccgtg
cacaacgcgcaggtgcccggcgagatcctccgctccggggccggctggacgccggtgctg
cggacccgggtggaccggccgcaggccgtccccggcctcgtcggccaccgcgcgggcgcc
ggacgcctgcgctga
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