Winmispira thermophila DSM 6578: Spith_0512
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Entry
Spith_0512 CDS
T02016
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
stq
Winmispira thermophila DSM 6578
Pathway
stq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
stq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Spith_0512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stq03021
]
Spith_0512
03400 DNA repair and recombination proteins [BR:
stq03400
]
Spith_0512
Enzymes [BR:
stq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Spith_0512
Transcription machinery [BR:
stq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Spith_0512
DNA repair and recombination proteins [BR:
stq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Spith_0512
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AEJ60792
UniProt:
G0GF93
LinkDB
All DBs
Position
607530..611024
Genome browser
AA seq
1164 aa
AA seq
DB search
MFSRDTEVTRQLLTTGRPEVMDLPNLLEVQFSSYEKFLQAEKIRKGEPLAVQGLEEVFRS
SFPIESPNGDMRLEYDFYTLDFEAIKYSEEECKRKGLTYAVPLKAQINLIFLETGEIRQK
MIYLGDIPLMTDRGTFIINGAERVVVSQIHRSPGVIFSHEKGVYGARIIPYRGSWLEFEV
DAKKDLIYAKIDRKKRILGTLFLRALGFDTREKIISAFYETKEVTVSSETKDEVVGRVLA
RDVYTGEGSDQKKLLRAGAKIHPHEMDELLHAGVERVWVIDDEHPDSLHSEVILNCFDRE
EAKYTREEEGTDEPTKEDAIIAVYSAIMPGDPITIENAEKDLQAMFFSERRYDLGDVGRY
KLNKKFDYDPPLSSTVLTLDDIVNTMRHLIKVYIGEEPVDDIDHLGNRRVRSVGELLTAE
LKTAFSRMERIAKERMSLKESDTIKPQDLISIKPIVAAIKEFFGSSQLSQFMDQVNPLSE
LTHKRRLNALGPGGLSRERAGFEVRDVHYTHYGRMCPIETPEGPNIGLILSLALYARVNE
YGFLEAPYRKVKDGRVTNEIEYLTAMDEEKYFIAQANAPIDEEGRFLTDQVSVRKGGDYT
TRPPETIQYMDVSPRQTVSASASLIPFLEHDDANRALMGSNMQRQAVPLIFPEPPRVGTG
MERRCAYDSGVVVKARRAGVVEYVSSTKVVIKPDGVTDERERDIYFLQKYQRTNQDTCFN
QRPIVNKGQRVEKGDVLADGPSTFKGELALGRNVLVAFVPWYGYNFEDAILISERLLKQD
VFTSIHIKEFSIEVRETKLGPEKITRDIPNVSEKHLEHLDEEGIVRIGAKVKSGSILVGK
ITPKSDAELTPEFKLLNSIFGEKAKDVRDTSLRVPHGAEGTVIDVQRLRRSEGDELPPGV
EEVVKVLVASKRKLQEGDKMAGRHGNKGVISRVLPEEDMPFLADGTPVDICLNPLGVPSR
MNLGQILETELGWAAVALDEWYATPVFESASPEMIEEKLREAGLPETSKTTLYDGRTGEA
FHQPVMVGYMYMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEA
YGAANTLQELLTIKSDDMEGRTKIYESIVKGEPSTSPGIPESFNVLVQELRGLALDITVQ
DTKGKPVPLTERDEELLTRQGEKF
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgtttagcagagacaccgaggtaacacgccagctcctcaccaccggaaggccggaggtg
atggatctgccgaatcttctcgaagtccagtttagttcatacgagaagtttctgcaagcc
gaaaagataaggaaaggggaacctctcgcggttcagggcctggaggaggtcttccggtcc
tccttccccatagagagtcccaacggcgacatgcgtctcgagtatgacttctacaccctg
gatttcgaggccatcaagtactccgaagaggagtgcaaaaggaaggggttgacctacgcg
gtgccgctcaaggcgcagatcaacctcatctttctcgaaaccggcgagattcgtcagaag
atgatctatctcggtgatatccccctcatgaccgacagggggacgttcatcatcaacggg
gctgagcgcgtggtggtgagccagatccatcgatcgccgggcgtcatcttctcccacgag
aaaggtgtctatggagcccgtatcatcccctacagaggctcgtggctggagttcgaagtc
gacgccaagaaggacctcatctatgcgaaaatagatagaaagaaacggatactcgggacc
ctcttcctccgtgctctcgggttcgatacgagggagaagatcatctcggccttctacgag
acgaaggaggtgacggtttcctcggagacgaaggatgaggtggtgggaagggtgctcgcc
cgggacgtgtacacgggcgaaggctccgatcagaagaagctcctccgtgcaggagcgaag
atccacccccacgagatggacgagctcctccatgccggcgtggagcgcgtgtgggtcatc
gacgacgaacatccggattccctccactccgaggtgatcctcaactgtttcgaccgcgag
gaggccaagtacacccgggaggaggaggggaccgacgagcccaccaaggaggatgccatc
atcgccgtgtattcggccatcatgcccggggatcccatcaccatagagaacgcggagaag
gacctccaggccatgttcttctccgagcgccgctacgacctcggcgacgtggggcgctac
aagttgaacaagaagttcgactacgatcctcccctctcgagcacggtgctcacgctcgac
gacatcgtgaacaccatgcgccacctcatcaaggtgtatatcggcgaggaaccggtggac
gatatcgaccacctcggaaaccggcgcgtgagatcggtgggagagctcctcaccgccgag
ctcaagactgccttctcccggatggagcgtatcgcaaaggaacgcatgtcgctcaaggag
agcgatacgataaagcctcaggacctcatctccataaagcccatcgtggcggccatcaag
gagttcttcggctcgagccagctctctcagttcatggatcaggtgaacccgctctccgag
ctcacccacaagcggcggctcaatgccctcgggcccggagggctttcccgtgagcgggcg
ggattcgaggtgcgggacgtacactacacccactacgggaggatgtgtcccatcgagaca
ccggaagggccgaacatcgggctcatcctctcgctcgcactctacgcgcgggtgaacgag
tacggattcctcgaggccccctaccggaaggtgaaggacggccgcgtcacgaacgagatc
gagtacctcacggccatggacgaggagaagtatttcatcgcccaggcgaatgcgcccatc
gacgaggagggccggttcctcacagatcaggtctcggtgaggaaggggggcgactatacc
acccggccgcccgagacgatccagtacatggatgtctcgccgcggcagaccgtgtccgca
tcggcctcgctcatccccttcctcgagcatgacgacgcgaaccgggccctcatggggtcg
aacatgcagcgccaggccgtgcccctcatctttccggagccccccagggtggggaccggc
atggagcgacggtgcgcctacgactccggtgtggtggtgaaggccaggcgtgccggggtg
gtggaatacgtctcctccaccaaggtggtgatcaagccggacggggtcaccgacgagagg
gagcgggacatctacttcctccagaagtaccagcggaccaaccaggatacgtgcttcaac
caacggcccatcgtgaacaaggggcagcgggtggagaagggggacgtgctcgcggacgga
ccctccacgttcaagggcgagctcgccctgggacggaacgtgctcgtggccttcgtcccc
tggtacgggtacaacttcgaggacgccattctcatctcggagcgactcctcaagcaggat
gtgttcacctccatacatatcaaggagttctcgatagaggtgcgggagacgaagctgggg
ccggagaagatcacccgtgacatcccgaacgtgagcgagaaacacctcgagcacctcgat
gaagagggaatcgtgaggatcggggccaaggtgaagtcgggttcgatcctggtgggaaag
atcactccgaagtcagacgccgagctcacgcccgaattcaagctcctcaattcgattttc
ggagaaaaggccaaggatgtgcgggacacctcactcagggtgccgcacggcgccgagggg
accgtgatcgacgtgcagcgcctccgcaggtccgagggtgacgaacttcctccgggagtg
gaggaggtggtgaaggtcctcgtggcctccaagaggaagctccaggaaggcgacaagatg
gcgggacgtcacgggaacaagggggtcatctcccgggtcctcccggaggaggacatgccc
ttcctcgcggacggcaccccggtggacatctgcctcaatcccctgggcgtgccctcccga
atgaacctgggccagatactcgagaccgagttgggatgggctgccgtggccctcgacgag
tggtacgccacgccggtcttcgaatcggcgagtcccgagatgatcgaggagaagctgagg
gaggcgggtctccccgagacctccaagaccaccctgtacgacggaagaacgggggaggcc
ttccatcagccggtgatggtgggctacatgtacatgctcaagctcaaccacctggtggac
gacaagatgcacgcccgttccaccggtccttactccctcgtgacgcagcagccgctcgga
ggaaaggcccagttcggcggccagcgtctcggggagatggaggtatgggctctggaggcc
tacggcgcggcgaataccctccaggagctgctcaccataaagtccgacgacatggaagga
cgcaccaagatctacgagagcatcgtcaagggcgagccctcgacctctccggggatcccg
gagtccttcaatgtgctcgtccaggagctgagaggccttgccctcgatatcacggtgcag
gacacgaagggcaagcccgttccgctcaccgagcgggacgaagaactcctcacccgtcag
ggtgaaaaattctag
DBGET
integrated database retrieval system
