Spirochaeta thermophila DSM 6578: Spith_0513
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Entry
Spith_0513 CDS
T02016
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
stq
Spirochaeta thermophila DSM 6578
Pathway
stq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
stq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Spith_0513
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stq03021
]
Spith_0513
03400 DNA repair and recombination proteins [BR:
stq03400
]
Spith_0513
Enzymes [BR:
stq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Spith_0513
Transcription machinery [BR:
stq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Spith_0513
DNA repair and recombination proteins [BR:
stq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Spith_0513
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
RnfC_N
MCM_C
Motif
Other DBs
NCBI-ProteinID:
AEJ60793
UniProt:
G0GF94
LinkDB
All DBs
Position
611036..615247
Genome browser
AA seq
1403 aa
AA seq
DB search
MKNMQEFAAIRIMLASPELIRARSYGEVKKPETINYRTLRPERDGLFCERIFGTTKEWEC
YCGKFKSIRYKGVVCDRCGVEVTHFKVRRERMGHIELAAPVSHIWFYRSVPSRMGLLLDL
SVSALRSVLYYEQYIVIDPGDTDLKKMELLTEEEYLEARERYGMSFTAGIGAEAIRTLLK
NLDLDALAGELRAKMLEKGPKADKRLLKRLELVEQFRDSGNRPEWMILDVIPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLMALNAPDIIIRNEKRMLQEAVDALFDNSK
KRRAVKGASNRPLKSLSDILRGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMHQCGLPVK
MALELFKPFIMRKLVEREVVYNIKRAKTLVEQEADEVWAVLDEVIQEHPVLLNRAPTLHR
LGIQAFEPVLVEGKAIKLHPLVCHAYNADFDGDQMAVHVPLTQAAQTECWTLMLSSRNLL
NPANGKPIVFPSQDMVLGIYYLTQVKKGAKGEGRYFASEDELVYAAECGAVDYHALVKVR
VSKAPHNGAFVETSAGRVIFNQALPPELEFVNQVFTDKELRQFVGRVYQEKGRGVAVRLL
DAMKEVGFKYATLSGTTFSLADVVVPEDKKAMIEEANQKVAAIQEQYLSGHITNEERYNR
VIEVWSKTNEDLTNVMMKVLREDRDGFNPLYMMAHSGARGSRSQIRQLAAMRGLMAKPSG
EIIELPIRANFKEGLSVIEYFISTNGARKGLADTALKTADAGYLTRRLVDIAQDVVVNEE
DCGTINGIEMRALKDGEEIVENLADRIKGRFTIERVKHPITGEIIVDVDQEITDEKAREI
EEAGIEAVRVRSVLTCEARHGVCQKCYGRNLATNRLVEIGEAVGIVAAQSIGQPGTQLTM
RTFHIGGTATRVVEENRVYLKYPVLVESLEGNVVELETGIRLFTRRGKVKARRILETHAL
DEKDEVLVENDQKVMTGQPLLRRASGEEISSGHNAIVRLKGDKLLLVAQEQSVEIRNGSE
IFVHPGDVLDVGETIAVFDPFSEPIIAEQSGVVKYHDMVLGTTLREEVNEDTGKIEKKIT
EHQLERLQPRIVIEDDEGNELGVYYLPGGAYVNVEDGERITAGRTLARMLRESVRTMDIT
GGLPRVGELFEARKPKNAAVLAQVSGTVHFHGIVKGKRVIVVEDEFGREYKHLIPMGRHL
LVREGDHVEAGEKLCEGPVSPHEVLRILGENALQAFLLNEIQEVYRLQGVEINDKHIAII
IRQMMKKVEIVEVGDTKFIYGQQVDRREFFEENERVRRQGGQPAVARPLLLGITKASLSI
DSFIAAASFQETTRVLTNAAIAGSVDYLRGLKENVIIGHLIPAGTGVQRYREIKLYDEHK
QDLDLKVRELLEARSQEEETLEI
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacatgcaggagtttgctgcaatcaggataatgctcgcttcccccgagctcatc
agggctcgcagttacggggaggtgaagaagccggagaccatcaactaccgcaccctcagg
ccggagcgcgatggccttttctgtgagcggatcttcggtaccaccaaggagtgggagtgt
tactgtgggaaattcaagtccatccgatacaagggggtggtctgtgaccgatgcggcgtc
gaggtgacccacttcaaggtgaggagggagcggatggggcacatcgagctcgccgcccct
gtctcccatatctggttctaccgctccgtgccctcccgcatgggcctcctgctcgacctg
agtgtctcggccctccggtcggtgctctactacgagcagtacatcgtgatcgatccgggt
gacaccgatctcaagaagatggagctcctcaccgaggaggagtacctggaggcccgcgag
cggtacggcatgtcgttcaccgcggggataggggccgaggcgatccgtaccctgctcaag
aacctggacctggatgccctcgccggcgagctgcgggccaagatgctggagaagggaccc
aaggcggacaagcgcctcctcaagcgtctcgagctcgtggagcaattcagggactccggc
aaccgcccggaatggatgatcctcgacgtgatcccggtgatcccacccgagctcagaccc
atggtgcagctcgacggcggaaggttcgccacgtcggatctcaacgacctctaccgaagg
gtcatcaaccgcaacaacagactcaaacgcctcatggccctcaatgctccggatatcatc
atccggaacgagaagcgcatgctccaggaggcggtggatgccctgttcgacaactcgaag
aagcggagggcggtgaaaggcgcttccaatcggcccctcaagtcgctctcggacatcctt
cggggcaagcagggccgattccgccagaacctcctcggaaagcgggtcgactactccggt
cgttcggtcatcgtggtggggcccgagctcaagatgcaccagtgcggactgcctgtgaag
atggcccttgagctcttcaagcccttcatcatgcgcaagctcgtggaacgcgaagtggtc
tacaacatcaaacgggccaagaccctcgtggagcaggaggccgacgaggtctgggccgtg
ctcgacgaggtgatccaggagcaccccgtgctcctcaaccgtgcacccacactccatcga
ctggggattcaggccttcgagccggtgctcgtggaggggaaggcgatcaagctccatccc
ctcgtgtgccacgcctacaacgcggacttcgacggggaccagatggcggtgcacgtgccg
ctcacccaggccgcccagaccgagtgctggaccctcatgctctcctcgcggaacctcctc
aatcccgcgaacggcaaacccatcgtattcccctcacaagacatggttctcggtatctac
tatctcacccaggtgaagaagggggccaagggtgaggggcgctacttcgcctcggaggac
gagctcgtgtacgcggccgagtgcggggcggtggactaccacgccctggtgaaggtgcgc
gtctccaaggccccccacaacggggcgttcgtggagaccagcgcgggccgggtgatcttc
aaccaggccctcccgcccgagttggagttcgtgaaccaggtgttcaccgacaaggagctc
aggcagttcgtggggcgcgtgtaccaggagaagggacggggggttgccgtccgcctcctc
gacgcgatgaaggaggtgggcttcaagtatgcgaccctctccggtaccaccttctcgctg
gccgatgtggtggttcccgaggacaagaaggcgatgatagaggaggcgaaccagaaggtc
gccgccatccaggagcagtacctctcagggcacatcacgaacgaggaacgatacaaccgc
gtgatcgaggtgtggagcaagacgaacgaagacctcaccaacgtgatgatgaaggtcctc
agggaggatcgcgatgggttcaacccgctctacatgatggcccactcgggggcccgtgga
agccggagccagatcaggcagcttgcggcgatgcgcggtctcatggcgaagccgtcggga
gagatcatcgagctgcccatcagggcgaacttcaaggaagggctctcggtgatcgagtac
ttcatctccacgaacggtgcgcgtaagggactcgccgacacggccctcaagaccgcggac
gccggctatctcacgagacggctcgtggatatcgcccaggacgtggtggtgaacgaagag
gactgcggtaccatcaacgggatcgagatgcgcgccctcaaggacggtgaggagatcgtg
gagaacctggccgacaggatcaagggacggttcaccatcgaacgggtgaagcatcccatc
accggcgagatcatcgtggacgtggaccaggagatcaccgacgagaaggcgcgtgagatc
gaggaggccggtatagaggcggtgcgggtgcggagcgtgctcacctgtgaggcacggcac
ggtgtgtgccagaagtgttacggccgtaacctggcgaccaaccgcctcgtggagatcggg
gaagcggtgggtatcgtcgctgcgcagtcgatcggccagccgggtacccagctcaccatg
cgtaccttccacatcgggggtactgccaccagggtggtggaggagaaccgcgtgtatctc
aagtacccggtgctcgtggaatcactggagggcaatgtcgtggagctggagacgggtata
cgcctcttcacccgtcgcgggaaagtgaaggcccggaggatcctcgagacgcacgccctc
gacgagaaggacgaggtgctcgtagagaatgatcagaaggtgatgacggggcagcccctc
ctcaggcgtgcatcgggtgaggagatctcctccggccacaacgccatcgtccgcctgaag
ggggacaagctcctcctcgtggcccaggaacagtcggtggagatcagaaacggatcggag
atcttcgtccatccgggcgacgtgctcgatgtgggagagaccatcgcggtcttcgacccc
ttcagtgagcccatcatcgcggaacagagcggtgtggtgaagtaccacgacatggtactg
ggcacgaccctccgggaggaggtgaacgaggataccgggaagatagagaagaagatcacc
gagcaccagctcgaacgtctccagcccaggatcgtgatagaggacgacgagggcaacgaa
ctcggcgtgtactatctcccgggcggtgcctatgtgaacgtggaagacggggagcgcatc
accgctggtcgtaccctcgcgcggatgctcagggagagcgtccgaaccatggacatcacc
ggtggtctgccccgggtgggtgagctcttcgaggcccgcaaacccaagaacgccgcggtc
ctcgctcaggtgagcggcacggtgcacttccatggtatcgtgaagggcaagcgggtgatc
gtggtggaggacgagttcggtcgggaatacaagcacctcatccctatgggacgccacctc
ctcgtccgggaaggcgaccacgtggaggcgggcgagaaactctgtgagggccccgtgagc
ccccacgaggtcctccggattctgggggagaacgcacttcaggccttcctcctcaacgag
atacaggaggtgtaccgacttcagggggtggagatcaacgacaagcacatcgccatcatc
atcaggcagatgatgaagaaggtggagatcgtcgaggtgggagacaccaagttcatctac
ggccaacaggtcgacaggcgggagttcttcgaggagaacgagcgtgtgcgacggcagggc
ggacaacccgccgtggcgcggcctctgctcctcggtatcaccaaggcttccctcagcatc
gattccttcatcgctgcggcctccttccaggagaccaccagggtgctcaccaatgccgcg
atcgcaggatcggtggactatctgcgagggctcaaggagaacgtgatcatcgggcacctc
attcccgcaggtacgggggtccagcggtatcgagagatcaagctctacgacgaacacaaa
caggatctcgacctcaaggtgagggagttgctcgaggcacgatcccaggaggaggagacc
ctcgagatctag
DBGET
integrated database retrieval system
