Winmispira thermophila DSM 6578: Spith_0668
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Entry
Spith_0668 CDS
T02016
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
stq
Winmispira thermophila DSM 6578
Pathway
stq03410
Base excision repair
stq03430
Mismatch repair
stq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
stq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Spith_0668
03430 Mismatch repair
Spith_0668
03440 Homologous recombination
Spith_0668
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stq03400
]
Spith_0668
DNA repair and recombination proteins [BR:
stq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Spith_0668
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Spith_0668
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Spith_0668
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AEJ60947
UniProt:
G0GAB1
LinkDB
All DBs
Position
769264..771393
Genome browser
AA seq
709 aa
AA seq
DB search
MARWQKPPIDKNRVLGISERFGLDLLTSTILVRRGLDSPEELSFFMERHLRYLHNPFLFE
DMPLAVERVIQAKEERERILVFGDRDADGISSTVLLTEFLEEMGMEVDWRVPMGDEQYGL
SLDAVEEHARNGGSLIITVDCGISSVREITRAAELGLDVIVLDHHEPKEELPPAYAIIDP
KVEGAGYPFRDLAGCGVVAKFLWALTFGLTDHFNQEVSLLNIRPGNEAYIVEVIRTENLI
ELDRVQESIVPGMVPVDRTRIYDLIAQSPIYVYDLPLQQRLFQATFGRGVELQAFDLKPL
VERLYPSLKGRSLLRLKDRSRGALYREKPPEEIDVLFSLFQAVLMEETGVLRSMERVMDL
VGLGTLADLMPLRNENRILVREGLVRLSDPERPGLRALMARQKLLGKKLAPRDVLWQVGP
VINASGRMGSPDVAVRLLLCRDSAEAEALGDELLKLNDERKRLGEDLWQRIQPQAYESFT
RFKEKFVLVYHDAVQRGVTGILAARLAQKFKVPAAILAPLEEEGRLVGSLRSFQGVGVLN
LLTACEDLLMEYGGHDFAAGFSLHPERLEEFIERLVEVVEDLGLPLRDEEPLIIDAEIPP
SWMTPDIMKVVEFFAPYGEQNPPLRLLYREAVVRDIQFIGRNGQPHVKFHLAMGGSLWPA
VYWGASDKVNVEFSENDEVDVVFTPTWNTFQNQETIQLTVVDMKRCEGS
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
gtggcacgctggcagaaaccgcctatcgataagaacagggtgctcggaatctccgaacgg
ttcggactcgaccttctcacctccaccatcctggtgaggagggggctcgactctcccgag
gaactttccttcttcatggaacgacacctccgatacctgcacaaccctttcctgttcgaa
gatatgccccttgccgtggaacgcgtgatccaggcgaaggaggagagggaacgtatactc
gtcttcggggacagggatgcggacgggatcagctccaccgtgctcctcacggagttcctc
gaggagatgggtatggaggtggactggcgggtccccatgggggacgaacagtacgggctt
tccctcgatgcagtggaggaacatgcccggaacgggggatcgctcatcatcaccgtggac
tgcggcatctccagtgtgcgggagatcacgagagctgccgagctcggtctcgacgtcatc
gttctcgaccaccacgaacccaaggaggaactccctcccgcctacgccatcatcgatccc
aaggtggagggggccggttacccgttccgcgatctggccggatgcggtgtggtggcgaag
ttcctctgggctctcaccttcggcctcaccgaccacttcaaccaggaggtgagcctcctc
aatatacggccgggtaacgaggcctacatagtggaagtgatacgcaccgagaacctcata
gagctcgacagggtgcaggaatcgatcgtaccgggcatggtcccggtggaccgcaccaga
atctacgatctcatcgcccagtcccccatctacgtgtacgatctgccgctccagcagcgg
cttttccaggctacgttcggcaggggcgtggaactccaggccttcgacctcaagccgctg
gtggaacgcctctacccctcgctgaagggcaggagcctcctcagattgaaggacaggtcc
cggggcgccctctacagggagaagcctcccgaggagatcgacgtcctcttctccctcttt
caggccgtactcatggaggagaccggggtgctccgctccatggagcgggtgatggacctg
gtggggctgggaacgctcgccgatctcatgcccctcaggaacgagaaccggatcctggtg
agagaggggctcgtccgtctctccgatccggaacggccggggctcagggccctcatggca
cgtcagaaactcctgggcaagaagctcgctccccgggacgtgctctggcaggtggggccg
gtcatcaatgcctcgggacggatgggatctccggacgtggcggtgcgtctcctcctctgt
cgggactctgccgaagcggaggccctgggtgatgagctcctcaagctcaacgacgaacgg
aagcgactcggggaggacctgtggcagaggatacagccccaggcctacgagagtttcacc
cggttcaaagagaagttcgtgctcgtgtatcacgatgcggtccagcggggcgtcaccggg
atcctcgcggcccggctcgcccagaaattcaaggtacccgccgccattctggcccccctc
gaagaagaggggaggctcgtgggttccttgagaagcttccagggcgtaggggtgctcaat
cttctcacggcatgcgaggacctcctcatggagtatggcggtcacgacttcgccgcagga
ttttccctgcaccccgagcgcctggaggagttcatcgagcgactcgtcgaggtggtggag
gacctggggcttccgcttcgcgatgaggaaccgctcatcatcgacgccgagatacctccc
tcatggatgacgcccgatatcatgaaggtggtggagttcttcgccccgtacggggagcag
aacccccccctcaggttgctctaccgggaggccgtggtccgtgacatccagttcatcggc
cgcaacggacagccgcacgtcaagttccacctcgccatgggaggctctctctggcctgcc
gtgtattggggggcgtcggacaaggtgaacgtggagttttccgagaacgacgaagtggac
gtggtgttcacccccacatggaacacctttcagaaccaggagaccatccagctcacggtc
gtggacatgaagcgatgcgaaggatcctga
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