Winmispira thermophila DSM 6578: Spith_1665
Help
Entry
Spith_1665 CDS
T02016
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
stq
Winmispira thermophila DSM 6578
Brite
KEGG Orthology (KO) [BR:
stq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
stq03016
]
Spith_1665
Enzymes [BR:
stq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Spith_1665
Transfer RNA biogenesis [BR:
stq03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Spith_1665
Prokaryotic type
tRNA splicing ligases
Spith_1665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AEJ61925
UniProt:
G0GBB6
LinkDB
All DBs
Position
complement(1871729..1873162)
Genome browser
AA seq
477 aa
AA seq
DB search
MELVRESTYRYVIPPHEEMRVPAVVYTTEDLLPLLTKDEALRQLANVARLPGVVRCAVGM
PDMHQGYAFPIGTVAAFDIEEGVVSPGGVGFDINCGVRVIRTSLTAPEVKRVLEEIGNIL
FATVPAGLGSRGLEKFSHKEARRAMKKGLGWALEKGMAVEEDLEATEEEGCLRDADPQLV
SDEALDRGREEFGTLGSGNHFLEIDVVEKVFDPQKAKALGLFEGQVVIWIHTGSRGLGHQ
IAMDYMEKMRPRMESYGIPLFERDFVSLPVKAPQSQAYLGAMAAAANFAWVNRQLITHRV
REAFSRVFRRPWDELGLFLLYDVAHNIAKYEVYEVDGAERMFLVHRKGATRAFPAGHPAL
RGIFREVGQPILLPGDMKRGSYVLLGTDRALKESFGSVAHGAGRQMSRHAAKKAFGFKEM
QEDLAREEIRLYAVDRRRAQEEAPGAYKDVDAVVKPLVGEGLAVPVVRTRPLLVIKG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggagctcgtgcgcgagagcacctatcgctacgtgatcccccctcatgaggagatgcgg
gtgccggccgtggtgtataccaccgaggaccttctccccctcctcacgaaggacgaggcc
ctgaggcagcttgccaatgtggcgcggctccccggggtggtgcggtgtgccgtgggcatg
cccgacatgcaccaggggtacgccttccccatcggcacggtggcggccttcgacatagag
gagggcgtggtctcacccggcggggtagggttcgacatcaactgtggggtgagggtcatc
cgcacctccctcaccgcccccgaggtgaagcgggtcctcgaggagatcgggaacatcctc
ttcgccaccgtccctgcaggccttgggtcccgggggctcgagaagttctcgcacaaggag
gcccggcgtgccatgaagaaggggctcggatgggccctggagaagggcatggcggtcgag
gaggacctcgaggccaccgaggaggaggggtgcctcagggacgccgatccccagctggtg
agcgacgaggccctcgacaggggccgggaggagttcggcaccctggggagcggcaatcac
ttcctcgagatcgacgtggtggagaaggtcttcgatccccagaaggcgaaggcgcttggg
ctcttcgaggggcaggtggtcatctggatccacaccggctcgcggggcctcggtcaccag
atcgccatggactacatggagaagatgcggcccaggatggagtcctacgggatccccctc
ttcgagcgcgacttcgtgagccttccggtgaaggccccccagtcccaggcctacctcggc
gccatggcagcggccgccaacttcgcctgggtgaaccggcagctcatcactcaccgggtg
cgggaggccttctcccgggtcttccgcaggccgtgggatgagctgggcctcttcctcctc
tacgacgtggcccacaacatcgccaagtacgaggtgtacgaggtggacggtgccgaacgg
atgttcctcgtgcaccgcaagggcgccaccagggccttccccgcaggtcatcccgccctc
aggggcatcttccgcgaggtggggcagccgatcctccttcccggggatatgaagcggggg
tcgtacgtcctgctcggcacagatcgggcgctcaaggagagcttcgggagcgtggcccac
ggtgcgggccggcagatgagccgccatgcggccaagaaggcgtttggcttcaaggagatg
caggaggacctcgcccgcgaggagatccgcctctatgcggtggacagaaggcgggcccag
gaggaggcaccgggggcctacaaggacgtggatgcggtggtgaagcccctcgtgggggag
ggtctcgcggtgccggtggtccgcacccggcccctcctggtgatcaaggggtag
DBGET
integrated database retrieval system
