Spirochaeta thermophila DSM 6578: Spith_1728
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Entry
Spith_1728 CDS
T02016
Name
(GenBank) DbpA RNA-binding domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
stq
Spirochaeta thermophila DSM 6578
Pathway
stq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Spith_1728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stq03019
]
Spith_1728
03009 Ribosome biogenesis [BR:
stq03009
]
Spith_1728
Enzymes [BR:
stq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Spith_1728
Messenger RNA biogenesis [BR:
stq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Spith_1728
Ribosome biogenesis [BR:
stq03009
]
Prokaryotic type
rRNA helicases
Spith_1728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DbpA
Motif
Other DBs
NCBI-ProteinID:
AEJ61988
UniProt:
G0GBX7
LinkDB
All DBs
Position
1947362..1948840
Genome browser
AA seq
492 aa
AA seq
DB search
MGRQTKSTLQNGIPAIFQNPEVEALLAKGKDVIIQVEEGEFPYPAYFFRGFPKVVEREGL
YLTSTEQRIIDLIREAGMHPASLPELLFLGGRTTPRREAQALAFPSHAICCTATRLIDHI
RRDNLSLQHIRRVVMEYPRDGETAEIFKADVEFVLSKVPSHPQCIVLSSDPQRAIADLKE
VLSHPQIVPLSSWKKSRTEKAWFPLEAPERMAEAVADLILSHDLKKVICYVPEALTEKLR
RTFIRTHISFSSILRDSSPGAEDRALKKFKTLDAEVLLLEAPRPFPSLYTAKAVIFAGVP
GPDIFLQGKRCLSEHIPLTHLFLLAPQTEEERIHELESRVGSIARREPPDEEAVAQGFLE
RVLECVDGQSPHVIEPYRKAFRKAVPFFRRADVAAYLVRNILSDSARSLLPMQDIFFSMG
KNRKIFPEDLKELVLSVEGLTEEDIGEIRVLDNYSFVEVSEPFAEKVISTLNGTDFKGKR
LTVNYGKRRSGR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
gtgggacgacagacaaagagcacgctgcagaacggtatccctgcgatcttccagaatcct
gaggtcgaggcccttcttgcgaaagggaaggatgtgatcatccaggtggaagagggggaa
ttcccctaccccgcctacttcttcagagggttccccaaggtggtggaacgtgaaggtctc
tacctcacctccacggaacagcgcatcatcgatctcatccgcgaggcagggatgcaccct
gcctcgcttcccgagctcctcttcctgggggggaggaccaccccgaggcgggaggcccaa
gcgctggccttcccctcccacgccatctgctgcaccgccacacgcctcatagaccacata
cggagggacaatctctccctccagcacatcaggcgagtcgtgatggaatatccgcgggat
ggagaaaccgcggagatattcaaggccgatgtggagttcgttctctcgaaggtgccttca
cacccgcagtgcatcgtcctctcctccgacccgcaacgcgcaatcgccgacctcaaggag
gtcctctcccatccgcagatcgtgcctctctccagctggaaaaagagccgaaccgaaaag
gcgtggttccccctggaggcccccgaacggatggccgaggccgtcgccgacctcatcctg
agtcatgacctcaagaaagtgatctgctacgtgcccgaggcgctcaccgagaagctgaga
cggacattcatcagaacgcacatctccttctcttccatactccgggattcctcgcccggg
gcagaggatcgcgcactcaagaagttcaagaccctcgacgccgaggtgctcctcctggaa
gcccctcgccccttcccctccctctacacggcgaaggccgtgatctttgccggcgtcccg
ggcccggacatcttccttcagggaaaacggtgtctgagcgagcacatacctctcacacat
ctgttcctcctcgccccgcagaccgaggaggagaggatccatgaactcgaaagccgggtg
ggctcgatcgcacggcgggaaccgcctgacgaggaggccgtggcgcagggattcctcgag
cgcgtcctggaatgtgtcgacgggcagagtcctcacgtcatcgaaccatacaggaaggcc
ttcaggaaagcggtgcccttcttccgcagggcggacgtggccgcctatctcgtgcggaac
atcctttccgactctgcgcggagcctgctgcccatgcaggacatattcttcagtatgggg
aagaaccgcaagatcttcccggaagatctcaaggaactcgtgctctcggtggaaggtctc
acggaagaggatatcggagagattcgggttctcgacaactattccttcgtggaagtgagc
gagccgttcgcggagaaggtcatctccaccctcaacggtacggacttcaagggaaaacga
ctcacggtcaactacggtaaacggaggagtgggaggtga
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