Sebaldella termitidis: Sterm_0090
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Entry
Sterm_0090 CDS
T01123
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
str
Sebaldella termitidis
Pathway
str03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
str00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sterm_0090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
str03400
]
Sterm_0090
Enzymes [BR:
str01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sterm_0090
DNA repair and recombination proteins [BR:
str03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Sterm_0090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_30
AAA_19
UB2H
Motif
Other DBs
NCBI-ProteinID:
ACZ06975
UniProt:
D1AJR8
LinkDB
All DBs
Position
97159..100113
Genome browser
AA seq
984 aa
AA seq
DB search
MKDLDIELNKNKLYRGSIPSFLSDGKNKKIIYISTSNRNLENYHYSLDKDYKGNLNLFEN
ISSNAEDMVGININLLNILKNDKEYLMLVNLQIALSSFFEDIRKEEFQVGKTYSIKEISD
FLTENNYDYNYMLEKKGEWSKRGDIVDIFPPSYENPVRMEFFDDELESIRFFDIDTQKSI
SKTDRIEIYSNIPQEGRFEFIELLDEIKAEDVLVYLENDELIEYKIEEYILLNRDNEDQI
RKRYTNLLEKGEIINLMNFSHEQLKTFQDKDKLIKLSEKADVEIHTLNTKKLKEVYKGTK
IKVVEEELLEGYIADGKFVLTERELDGVVVQKKVNTKKQIKYKDLNQIREDDYVIHEQYG
VGKYKGIEQMNNRDYLKIKYADEDILFIPIEHLDRLEKYISYGEEPKVYKLGTKGFKYKK
KKLEEEIRAFAEELVKIQAIRASNQGFVYSKDTVWQEEFEEEFPFVETEDQKRAIEDVKN
DMESDKIMDRVICGDVGYGKTEVAMRAAFKAIVDGKQVALLTPTTILAEQHYERFKQRFS
KYPMTIENLSRLSDTKKVREILHKLETGVLDMVIGTHRILSEDVKFKNLNLLIIDEEQKF
GVKSKEKLKKKREKIDILTLTATPIPRTLNLTLLGIRDISVIETPPVNRVPIETIIEEQG
LDIKRAVLKELARDGQIFYIYNNVKFMEDKMKELKSQLPEFVKIDYIHGQLPPKLIKERI
KKFENGEYDILMATTIIENGIDISNVNTIFIENFDKLGLSQVYQLRGRVGRSNRQSYCYL
IKSLISTKKSKKREETFDNIEDATASGMQLSLEDLKIRGAGEILGEKQHGTIETFGYDLY
VKMLRKEIEIQKGTYVEAAPDVNIELKDKGFIPDSYIEADEKLNIYKRFIMLNNEKDLAG
LLDEVKDRFGKFPEDFERFVDYMRLKIFAQNNNIKKLREKDNMIEIEFSKNISQEHINVL
LLEDSKLNRKTLKINKNKLLKKIT
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttagatatagaattaaataagaataaactctatagaggaagcatcccttca
tttttatcagatggtaaaaataagaaaataatatatatttccacatctaaccgtaatctg
gaaaattatcattactctcttgataaagattacaaaggaaacctgaatttatttgaaaat
atatccagcaatgctgaagatatggtagggataaacataaacctgctgaatattctgaaa
aacgataaagaatatctgatgctggtaaatctgcagatagcgttaagttcgttttttgag
gatatcaggaaagaggaatttcaggtgggaaaaacatacagcataaaggagatatctgat
tttctcacagaaaataactatgattataattatatgctggaaaaaaagggcgagtggagc
aaaagaggagatatagtggatatcttcccgccaagctatgaaaatcctgtaagaatggaa
ttttttgatgatgagctggaaagcataagattttttgatatagatacccaaaagtcaata
tcaaaaacagatagaatagaaatatactctaatatcccccaagaggggcgttttgagttt
atagagctgcttgatgaaataaaggccgaagatgtacttgtgtatcttgaaaatgacgag
ctgatagaatacaagatagaggagtacattttgctgaacagggacaatgaagatcaaata
agaaaaagatatacgaatcttctggaaaaaggtgaaatcataaatctgatgaatttttcc
catgaacagctaaagacttttcaggataaagataagcttataaagctttccgaaaaagca
gatgtggaaattcacacattaaatacgaaaaaattaaaggaagtatataaaggaacaaag
ataaaggtcgtggaagaagagcttctggaagggtatattgcagacggaaaatttgttctt
acagaaagagagcttgacggagtagtagtacaaaaaaaagtaaatactaaaaaacagata
aaatataaggatctgaaccagataagagaagatgattatgtaatacatgaacagtacgga
gtagggaagtacaaagggatagaacagatgaacaacagggattatctgaaaatcaagtat
gcagacgaggatatactatttatacctatagagcatctggacagactggaaaaatatatt
tcctacggggaagagccaaaggtatataagctgggaaccaaaggattcaagtataagaaa
aagaagctggaagaagaaataagggcatttgcagaagagctggtaaagattcaggcaata
agagcttcgaatcagggatttgtgtattccaaagatacagtctggcaggaggaattcgaa
gaggagtttccttttgtggaaaccgaggatcagaaacgggcaatagaagatgtaaaaaat
gatatggaatcagataagataatggacagggttatatgcggggatgtaggctacggaaag
acagaagtggctatgagagctgcttttaaggcaatcgtagacggtaaacaggtagccctg
cttacacctactactattcttgccgaacagcattatgaaagatttaaacaaagattttca
aaatatcccatgacaatagaaaatttatcaagactgagtgatacaaaaaaagtaagagaa
attctgcataaactggaaacgggagttcttgacatggttataggaactcacagaatactt
agtgaagatgtgaaattcaaaaaccttaacttattgataatagatgaagagcagaaattt
ggggtaaaatctaaggaaaaactaaagaaaaaaagagaaaaaattgatatactaacatta
acagctacacctattccaagaacactgaatctgactttactcggaataagggatatttcg
gtaatagaaaccccgccggtaaacagggttcctatagaaacaataatagaagagcagggt
ctggatataaaaagagcggtgctaaaagagctggcaagagacggacagattttttacatt
tataataatgtaaaattcatggaagataaaatgaaagagctgaaaagccagcttcctgaa
ttcgtaaaaatagattatatacacggtcagcttcctccgaaactgataaaggaaagaata
aagaagtttgaaaacggggaatatgacatacttatggctactacaatcatagaaaacggt
atagatatctcaaatgtaaatactatttttatagaaaattttgacaagctcgggctgtct
caggtatatcagctgcgcggaagagtgggaagaagcaacagacaaagttactgttatctt
ataaaaagtttgatttctacgaaaaaaagtaaaaagagagaggaaacttttgataatata
gaagacgctacagcaagcggaatgcagctgtcactggaagatctgaagataaggggtgcg
ggtgaaatactcggtgaaaaacagcacggaacgatagaaacctttggatacgatctttat
gtaaaaatgctgagaaaggagatagaaattcaaaaaggaacttatgtagaagcagcacct
gatgttaatatagagctgaaagacaagggattcattcctgacagctatatagaagcggat
gagaagctgaatatatataagaggtttatcatgcttaacaatgaaaaggatcttgccggt
cttcttgatgaagtaaaggacagattcggaaaattccctgaagattttgagcgtttcgtg
gattatatgagacttaagatatttgctcaaaataataacataaaaaaactcagagaaaaa
gacaatatgatagaaatagaattttcaaaaaatatttcacaagagcacataaatgtgcta
ttattggaagatagtaaattaaacagaaaaacattaaaaataaacaaaaataaattatta
aaaaaaataacatag
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