Sebaldella termitidis: Sterm_1120
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Entry
Sterm_1120 CDS
T01123
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
str
Sebaldella termitidis
Pathway
str03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
str00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sterm_1120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
str03019
]
Sterm_1120
03009 Ribosome biogenesis [BR:
str03009
]
Sterm_1120
Enzymes [BR:
str01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sterm_1120
Messenger RNA biogenesis [BR:
str03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sterm_1120
Ribosome biogenesis [BR:
str03009
]
Prokaryotic type
rRNA helicases
Sterm_1120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
Flavi_DEAD
Helicase_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ACZ07988
UniProt:
D1AFV3
LinkDB
All DBs
Position
1226274..1227866
Genome browser
AA seq
530 aa
AA seq
DB search
MNDKSFLDLGVSEATLKALDKKGFTSPSAIQTLVIPELLKERTNLIGQAQTGTGKTAAFA
IPILETLDCDGSVRAIVLAPTRELANQVADEMYSLRGKKEIKVLPVYGGQSIDQQIKKIK
KGIDVIVGTPGRILDLMNRKVIKLNNLEYFVLDEADEMLNMGFIEDIELILERTNEDKKM
LFFSATIPDSIMKIAKKFMKDYKLLKVKTKELTTNLTEQIYFEVTEGDKFEALCRVLDYV
HDFYGIVFCRTKSDVDDVAQHLKGRGYDAEAIHGDITQAMRMKTLEDFKKKRINILVATD
VAARGIDVNDLTHVINYSIPQEPESYVHRIGRTGRAGKKGIAITFVTPKEASKISKIQRL
TKTDIKKEKIPKIEEVISVKKENLYACVEEIEKEEDFGYYTGMAKELLGDKDPEVVLASL
LRHMYDDEFLPESYNEISEVKTGRGLNANNAGDDKTRLFIALGKKDGYTPGKLLDLLNKK
AKTPGRKVRDIKIMDNFSFITVPLREAEFIMKALNKSNKNKPLVEKAKKK
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgaacgataaaagctttttagatttgggagtgagcgaagcaacacttaaagcacttgat
aaaaaaggatttacatctccgagtgctattcagacacttgtaattcccgaacttttaaaa
gaaagaacaaatttgataggacaggctcagacagggacaggaaaaacagcagcatttgct
ataccgattctggaaacactggattgtgacgggagcgtaagagcgatagttctcgcacca
acaagagagctagccaatcaggtggcagatgaaatgtattctttaaggggtaaaaaagaa
ataaaggtgctacctgtttacggcggacagtcaattgaccagcagataaaaaagataaaa
aaaggaatagacgtaatagtaggaactccggggagaatactggacttaatgaacagaaag
gttataaagcttaataatcttgaatattttgtactggatgaagctgatgaaatgcttaat
atgggatttatagaggatatagaactgattcttgagagaacaaatgaagataaaaaaatg
ctgtttttctcggctacaatacctgattctataatgaaaatagctaaaaaattcatgaag
gactataaattactaaaggtaaaaacaaaagagctgactactaatcttactgagcagatt
tattttgaagtaaccgaaggggataaatttgaggctttatgcagagttttggactatgtt
catgatttttacggaattgtattctgcagaacaaaatcagatgtggatgatgtagcacag
cacttgaaaggaagaggctacgatgctgaagctatacatggtgatataactcaggcaatg
agaatgaaaacacttgaggattttaagaaaaagagaataaatatccttgtggctacagat
gtggcagcaagaggaatagatgttaatgatcttacgcatgtaattaactactcaataccg
caggagcctgaatcatacgttcacagaataggaagaacaggaagagcagggaaaaaggga
atagcaataacattcgttacacctaaggaagcttcaaaaatttccaaaatacaaagactt
acaaaaacagatataaagaaagaaaaaatacctaagatagaagaagtaatcagcgtaaaa
aaagaaaatctttatgcctgtgtggaagagatagaaaaagaggaagatttcggttactac
acaggtatggcgaaggaacttctgggagataaagatcccgaagtagttttggcttcactt
ttaagacatatgtacgatgatgagtttcttcctgaaagctataacgaaatttcggaagta
aaaactggaagaggtctgaacgctaataatgccggtgacgataaaacaagactatttata
gctcttggtaaaaaagacggttatactccggggaaattactggatttattaaataaaaaa
gctaaaactccaggaagaaaagtacgtgatataaagataatggataatttttcttttatt
acagtacctttgagagaagctgaatttataatgaaagcacttaataaaagcaataaaaac
aagccgcttgtagaaaaagcaaaaaagaaataa
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