Sebaldella termitidis: Sterm_1373
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Entry
Sterm_1373 CDS
T01123
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
str
Sebaldella termitidis
Brite
KEGG Orthology (KO) [BR:
str00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
str03016
]
Sterm_1373
Enzymes [BR:
str01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Sterm_1373
Transfer RNA biogenesis [BR:
str03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Sterm_1373
Prokaryotic type
tRNA splicing ligases
Sterm_1373
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ACZ08237
UniProt:
D1AHK3
LinkDB
All DBs
Position
1454638..1455777
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AA seq
379 aa
AA seq
DB search
MIEIRGKYNEAAAYTDIIEEQCLSQIYRMCKQKIFKDTIIKIMPDTHAGKGSVVGFTCAG
LDYVIPNIIGSDIGCGMEVTELGECEIDFEKLDSFIINNIPFSVNINKTVDKAVPKEWKK
TLKPLTDKINYDIRKALRAAGSLGGGNHFIEINTDKNNKKYLVIHSGSRKLGNETALYYQ
RKAEKYCREMREKNNKDSIYHIPKELSFLEGDAAAEYLEAMKMVQKYAELNRKIMSGRIA
EFLGIDYKNSEKFTSVHNYYNFEDRIIRKGAISAKEGEKVIIPLNMRDGSILAVGKGSKE
WNYSAPHGAGRLMSRGEAKGKISLEEFERSMKGIFTTSVKNSTIDEAPMAYKTPESIMIY
LEETVEVLEIIKPLYNFKA
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaataagaggaaagtataatgaggcagctgcctatactgatataatagaggag
caatgtttatcacagatttacagaatgtgcaaacaaaaaatatttaaagatacaataata
aaaataatgcccgacacacatgcaggaaaggggagcgtagtcggctttacatgtgcaggt
cttgattatgtgatacctaatataataggctcggatatcgggtgcggaatggaagttacc
gagctgggagaatgtgaaatagattttgaaaagctggacagttttataataaataatatt
cctttttctgtaaatattaataaaactgtggataaagcagtgccaaaggaatggaaaaag
acattgaagccgctgaccgacaaaataaattatgatataagaaaggcattgagagctgca
ggaagtcttggcggcggcaatcatttcatagagataaatacagataaaaataataagaaa
tatctggttattcattcagggagcagaaaactaggaaatgaaactgcgctttactatcaa
agaaaagctgaaaaatactgccgggagatgagagaaaaaaataataaggacagtatatat
catattccaaaagagctctcgtttttggaaggtgatgctgctgctgaatatctggaagca
atgaaaatggtgcaaaaatatgcagaattaaacagaaaaataatgtccgggaggattgca
gagtttcttgggatagattacaaaaattctgaaaagtttacttctgtacataattattat
aattttgaagacaggataataagaaaaggagcaatttctgcaaaagaaggggagaaggta
attattcccctaaatatgagggacggttcgattcttgctgtgggaaaaggtagtaaggaa
tggaattattcagcaccgcacggagcgggaagacttatgagccgcggagaggcaaaggga
aaaatcagccttgaagaatttgagagaagtatgaaaggtatattcaccacatcggtaaag
aattctacaattgatgaggcacctatggcatataaaactccggaatctataatgatttat
ctggaagaaactgtggaagtactggaaataataaaaccgctttataattttaaagcttaa
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