Sebaldella termitidis: Sterm_2948
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Entry
Sterm_2948 CDS
T01123
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
str
Sebaldella termitidis
Pathway
str03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
str00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sterm_2948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
str03021
]
Sterm_2948
03400 DNA repair and recombination proteins [BR:
str03400
]
Sterm_2948
Enzymes [BR:
str01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sterm_2948
Transcription machinery [BR:
str03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sterm_2948
DNA repair and recombination proteins [BR:
str03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sterm_2948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ACZ09791
UniProt:
D1ANI7
LinkDB
All DBs
Position
complement(3087390..3091343)
Genome browser
AA seq
1317 aa
AA seq
DB search
MSIRDFDSIQIKLASPDKIREWSYGEVKKAETINYRTLKPEMDGLFCERIFGPAKDFECA
CGKYKRMRYKGIKCEKCGVEVTTSKVRRERMGHIDLAAPVAHIWYSKGTPNKMSLLLGLS
TKELESVLYFARYVVTEPGETNLEKGVILTDREYRLYKSQFGEKFEAKMGAEGIIKLLEE
IDLARLEEELKNELEVSQSSQKRKKVVKRLKIVRDFIMSENRPEWMILTVLPVIPADIRP
MVQLDGGRFATSDLNDLYRRVINRNTRLKKLISINAPEIVIKNEKRMLQEAVDALIDNGR
RGKPVVTQNNRELKSLSDMLKGKNGRFRQNLLGKRVDYSGRSVIVVGPNLKIYQCGLPKK
MALELYKPFLMRELVKREIASNIKIAKKMVEEEDDYVWELIEEIIKNHPVLLNRAPTLHR
LSIQAFQPTLIEGKAIRLHPLVCSAFNADFDGDQMAVHLVLSPEAQMEARLLMLATNNII
APSSGKPIAVPSQDMVMGCYYMTKERRGEKGEGKLFSNKNQLITAYQNKQVGTHALVKVR
IDGEMIETTPGRLLFNTMLPKEVREYDKTFGKGALGKLIAELYELYGFERTSDLIDKIKN
FGFHYATSAGITVGIEDLEIPETKKSILENAEKEVADVEEQYKNGTIIDEERYRKTVAIW
SRAVDDVTKEMMDNLDEFNPVYMMANSGARGSIAQMRQLGGMRGLMADTQGRIMEVPIKA
NFREGLNILEFFMSSHGARKGLADTALRTAESGYLTRRLVDISHDVIINEHDCNTLEGII
VSDLVDGGNVIEKLDERIYGRTLAEDIVHEGEIIAERNELIGKELIKKISEFGIKAVKIR
TPLTCALEKGVCQKCYGLDLSNHKEILKGEAVGVIAAQSIGEPGTQLTMRTFHTGGVAQA
AAVQTNIKTDEAGKVKFKDLKILENEAGEEIVVSQNSKIVIDKQKYEIPSGSLLKVKDGE
KVEKGQVLVEFDPYHIPIISNEPGKVEFRDLYVRENIDHKYNVTERMAIKPVESGDVNPR
IIIYEKGKKVDEYSIPYGAYLMVREGDKVKKGQIISKIIKSGEGTKDITSGLPRVQELFE
ARNPKGKAVLSEIAGRVLISDKKKKGMRLILIVSPDTGKTIKEYTVPIGEHLVVTNEMLI
DKGTKLTDGPVSPHDILKIKGLIEAQQFILESVQQVYREQGVSVNDKHIEIIVKQMFQKV
KIKDSGDSLYLEDELVDKKIVDKENNELIKEDKKIATYEPVIQGITKAAVNTESFISASS
FQETTKVLANAAIEGKVDRLEGLKENVIIGKKIPGGTGFKEYRDMLLKEPVSEENNS
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
atgagtataagagattttgatagtatacagataaagcttgcttcaccggataagatcaga
gaatggtcttatggtgaggtgaagaaggctgaaacaataaactacaggacattgaagcct
gaaatggacggtttattctgtgagagaatattcggtcctgcgaaggattttgaatgtgcc
tgcggtaagtacaagcgtatgagatacaaaggaataaaatgtgaaaagtgcggggttgaa
gtaactacttcaaaagtaagacgtgaaagaatgggacatatagatttggcagctcctgta
gcacatatatggtattcaaaaggaacgcctaataaaatgagtcttcttttgggacttagt
actaaagaactagaatcagtattatattttgcaagatatgtagtaactgaacctggagaa
actaatcttgaaaaaggcgtaatacttacagacagagagtacagactttataaaagccag
tttggtgaaaagtttgaagctaaaatgggtgcagaaggaataataaagctgctggaagaa
atagatcttgcacggcttgaagaggaactgaaaaatgaacttgaagtttcacagtcaagc
cagaagagaaaaaaggtagtaaaaagactaaaaatagtaagagatttcattatgtccgaa
aacagaccagaatggatgatacttacagtattacctgtaattcctgctgatataagacct
atggtacagcttgacggcggaagattcgcaacaagtgatcttaatgatctttacagaaga
gtaataaacagaaatacaagattaaaaaaattaatatcaataaatgctccagaaatagta
ataaaaaatgaaaaaagaatgcttcaggaagctgtagatgccttaatagataacggaaga
agaggaaagccggtagttactcagaataacagagagctgaaatctctttcagatatgctt
aaaggtaaaaacggaagattcagacagaaccttcttggtaaacgggtagattactcagga
agatcagttattgtcgttggtcctaatctgaaaatatatcagtgtggacttccaaaaaag
atggctcttgagctttataagccatttttgatgagagaactggtaaaaagagaaatagcc
tctaatataaaaatagctaaaaaaatggtagaagaagaagatgactatgtatgggaatta
atagaagaaatcatcaaaaaccatccggttcttttaaacagagcccctacactgcacaga
ctgtcaatacaggcatttcagccgacattgatagaggggaaggcaataagacttcacccg
ctggtatgttctgcatttaatgcggattttgacggtgaccaaatggcagtacacttagtg
ttatctcctgaggcccagatggaagcaagacttcttatgctggctacaaataacattatt
gctccttcaagcggtaagcctatagcagtaccttcacaggatatggttatgggatgctac
tatatgacaaaagaaagaagaggagaaaaaggggaaggaaaattattctcaaataagaac
cagctgataactgcataccagaataaacaggtagggacacatgcgctggtaaaagtcaga
atagacggtgaaatgatagaaacaacaccgggaagacttttatttaatacaatgctgcca
aaagaagtaagagagtatgataaaacatttggaaaaggtgctcttggaaagctgatagca
gaattatatgaattatacggatttgaaagaacttctgacttaattgacaaaattaagaat
tttggattccattatgcaacatctgcaggaataacagtaggaatagaagatcttgaaata
cctgaaacaaaaaaatctattttggaaaatgccgaaaaagaagtagcagatgtagaagag
cagtataaaaacggaactattatagatgaggaaagatatagaaagactgtagcaatatgg
tcaagagcagtagatgacgtaactaaggaaatgatggataatcttgatgaatttaacccg
gtttatatgatggcaaactctggtgccagaggtagtatagcacagatgagacagcttgga
ggaatgcgtggactaatggcagatacacagggaagaatcatggaggtacctattaaggca
aactttagagaaggtctgaatatactggaattctttatgtcatcacacggtgccagaaaa
ggtctggcggatactgcattaagaactgccgaatcaggatatttgacaagaagacttgtt
gatatttcacatgatgttattataaatgaacatgattgtaatacacttgaaggaattata
gtttcggatctggttgacggcggtaatgtcatagaaaaacttgatgagagaatctatgga
agaactcttgcagaagatatagttcatgaaggtgaaataattgccgaaagaaatgagtta
atcggtaaagagctgattaaaaaaataagtgaatttggaataaaagccgtgaaaatcaga
acaccacttacatgtgcactggaaaaaggagtatgtcaaaagtgttacggactggatctg
tcaaaccataaagaaatacttaaaggtgaggcagtgggagttatcgcagctcagtcaata
ggtgagccgggaacacagctgacaatgagaactttccatacaggaggggtggcacaggca
gcagctgtacaaacgaatataaagacggatgaagcaggtaaagttaaatttaaagatttg
aaaatactggaaaatgaagcaggagaggaaattgttgtttcacagaattcaaaaatagta
atagataagcaaaagtatgaaattccgtcaggatctttattaaaggtaaaagatggggaa
aaggtagaaaaaggtcaggtacttgtggaatttgatccatatcatataccgataataagt
aatgagccaggaaaagtagaatttagagatctttatgtaagagaaaatattgatcacaag
tataatgttactgaaagaatggctataaaaccagtggaaagcggagatgttaacccgaga
ataattatttatgaaaaaggaaagaaagtagatgaatacagtattccttacggtgcatat
ctaatggtaagagaaggggacaaagtaaagaaagggcagattatttcaaaaataatcaag
tccggagaaggaacgaaggatattaccagcggtcttccaagggttcaggagctgtttgag
gcaagaaatcctaaagggaaagctgttttgtcagagatagcagggcgtgtacttatatct
gataaaaagaaaaaaggtatgagacttatactgatagtaagtccggatacaggaaaaaca
ataaaagaatatacagtaccaataggggagcatttggttgtaactaatgaaatgcttata
gataaagggacaaaactgacagacggaccggtttcaccgcatgatatactgaaaataaaa
ggtctgatagaagcacagcagtttatactggaatcagtacagcaagtgtacagagaacag
ggagtttcagtaaatgacaagcatatagaaataatagtaaaacagatgttccaaaaggta
aaaatcaaggattccggagattctttatatctggaagatgaattagtggataaaaaaatt
gtggacaaagaaaataatgagcttatcaaggaagacaagaaaatagctacatacgagcct
gttattcaagggattacaaaagccgcagtaaatacagaaagctttatttccgcttcatcg
ttccaggaaacaacaaaagttcttgccaatgctgcaatagaaggtaaagtagacagactg
gaaggattaaaagaaaacgtaataatcggtaagaaaattccaggtggtacagggtttaaa
gagtatagagatatgcttttaaaagaaccggtatcagaagaaaataacagttaa
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integrated database retrieval system
