Sebaldella termitidis: Sterm_4073
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Entry
Sterm_4073 CDS
T01123
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
str
Sebaldella termitidis
Pathway
str03410
Base excision repair
str03430
Mismatch repair
str03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
str00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Sterm_4073
03430 Mismatch repair
Sterm_4073
03440 Homologous recombination
Sterm_4073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
str03400
]
Sterm_4073
DNA repair and recombination proteins [BR:
str03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Sterm_4073
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Sterm_4073
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Sterm_4073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
LDcluster4
Motif
Other DBs
NCBI-ProteinID:
ACZ10905
UniProt:
D1AGF3
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All DBs
Position
4336866..4339460
Genome browser
AA seq
864 aa
AA seq
DB search
MKNTKWNFKKVNNAEIAKNNELPLDKDILSILYSRNISNKKDIIEFLNPSLSNIQDHHLL
KDLKKSVDIIFDAMKNKKNIWIYGDYDVDGITSTSLLYLVFQKLGYNNINYYIPIRDEGY
GLNKNAIEQIKNSGGDLIITVDCGITSFEEIDFANSLKLPVIITDHHEINKKLPKASAVI
NPKREDNEFSFKYLAGVGVAFLLAAGLFEEAGQKDEVYSLLDLTAIGTVADIVPLVQENR
IFVKFGLEQLLHTEIPGLKYLCSLIFDPGKKEYTTYDVGFILAPVFNAAGRLKDAKMVVK
LLTTDNKREIEIISKELISKNNERKVLQEKIIADVEENIQKNSLNDNYVIVDYSPEYHHG
VIGIVASKIIDTYYKPTVIMEVKEDEDIAVASARSIEGFNLIEALQTMPELFLKFGGHAG
AAGFTIPVKNIKSFIKKINDYAKKKLDENDFVKLINIDKEIPIQKVSYEFYQIIDLLKPF
GFGNPNPTFAVKNIILENIKHIGQNKNHLMFNIKKNGFVSRNAVWFGAGSNFKDLNQNIF
YDLAFKLKVEDYMDKSYTKVYVDDIKNSELNDDRYSYFYSLYHTVFPLKSIFYTNIELEP
DIPLTPKMDFEQISLFQGNKFVGRLDYNVSNLLTQLMKFYNYTFKIQIEDIQKTDIHYTV
DILIKKNYDFLSYAYNEKRLFIDIKNFILGNMEYDSFTKTVLASFFKGEKNLIIPNDKTY
NFKNAFLTFGIYFMKKNNLKSQIVTSSKSMQFSDLFLKHYFDINKEYKDGYPFTVFFNSA
PESEINERNIIISDDYENENYEKIDFSFVIPENVVLKTPKEIMKLENEKNIFFEFIPVKE
KLKIKKLLENGEKIYSDKSIYEIL
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacactaaatggaattttaaaaaagtaaacaatgctgaaattgccaaaaacaat
gagctgcctctggataaggatatcttaagtattctctattccagaaatatctcaaacaaa
aaagatatcatcgaatttttgaatcccagtctctcaaatattcaggatcaccatttgctg
aaagatttgaaaaaatccgttgatattatttttgatgcaatgaaaaataaaaaaaacatc
tggatttacggggattacgatgtagatggaattacatccacttcactgctttatcttgtt
ttccaaaaactggggtataacaatattaactactacattccaatccgtgatgaaggttac
ggtctgaataaaaatgcaattgagcagatcaaaaattcaggcggagatcttatcattact
gtagactgcggaattacttcttttgaagagattgattttgccaattctctgaagcttccg
gttattattaccgatcaccatgaaataaacaaaaaactgccgaaagcaagcgctgtaata
aatcccaaaagagaagacaatgaattttcatttaagtatcttgccggggttggagtagct
tttcttttggctgccggcttatttgaagaggcaggacaaaaagacgaggtatacagtctt
cttgatctcacagcgataggaactgtcgccgatattgttcctttggttcaggaaaaccgt
attttcgtgaaattcggtctggagcagcttcttcatacagagattcccggtttgaaatat
ttatgttcacttatttttgatcccggtaaaaaagaatataccacttatgacgtgggcttt
atccttgcaccggtttttaatgctgccggaagactcaaggatgctaaaatggtagtaaag
cttcttaccactgataataaaagagagatcgaaattatttcaaaagagcttatttccaaa
aataatgaaagaaaagttcttcaggaaaaaattattgcagatgtagaagaaaatatacaa
aaaaattcacttaatgataactatgtaatagtcgactattctccggaataccatcacggg
gtaatcggtatcgtggcttccaagatcatagatacctactataaacctactgtcattatg
gaagtaaaggaagatgaggatattgcagtagcttcagcaagaagcatcgagggctttaac
cttatagaagctctccagactatgccggagcttttcctgaaattcggcggtcatgccggt
gcagcaggtttcacaattccggtaaaaaatatcaaaagctttataaaaaaaataaatgat
tatgctaagaaaaagcttgatgagaatgactttgtaaaattaataaatattgataaagaa
atacctatacagaaagtttcttatgaattttatcagattatagacttgctgaaacctttt
ggcttcgggaatcccaatcctacttttgcagtaaaaaatattatacttgaaaatatcaag
catatcggtcaaaataaaaaccatcttatgtttaatataaaaaagaacggatttgtttca
agaaatgctgtatggtttggtgccggcagtaattttaaggatttgaaccagaatattttc
tatgatcttgctttcaagctgaaggtagaagattatatggataaatcctatactaaagtc
tatgttgacgatatcaaaaattctgaattaaacgacgatcgatattcatatttttattct
ctgtatcatacagtttttccgctaaaatctatattttatactaatatcgagcttgagccg
gatattcccctgacaccaaaaatggattttgaacagatttctctttttcagggcaataag
ttcgtcggcagacttgactataatgtttctaatctgcttacacagcttatgaagttttat
aattatacttttaaaattcagatagaagatattcaaaaaacagatatccactatacagtt
gatattttaatcaaaaaaaactatgattttttatcatatgcctataatgaaaaaagactt
tttatagatattaaaaattttattctgggaaatatggaatatgacagttttaccaaaaca
gtgcttgcatctttttttaaaggtgagaaaaatcttattatcccaaatgataaaacctat
aattttaaaaatgcatttttgacctttggtatatattttatgaaaaaaaataacctgaaa
tcacagattgttacttcaagtaaaagtatgcagttttctgatttatttctaaagcattac
tttgatataaataaagaatataaagacggttatccttttaccgtattctttaattctgcc
ccggaatcagaaattaatgaaagaaatatcatcatttcagatgattatgaaaatgaaaat
tatgaaaaaattgacttcagctttgttattccggaaaatgttgttctaaaaactccaaaa
gaaataatgaagctggaaaatgagaaaaatatattttttgagtttattcctgtaaaagaa
aaactaaaaataaagaaattacttgaaaacggagagaaaatatattctgataaaagtatc
tatgaaattttataa
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