Streptococcus sp. A12: ATM98_00870
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Entry
ATM98_00870 CDS
T05522
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
stra
Streptococcus sp. A12
Pathway
stra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATM98_00870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stra03019
]
ATM98_00870
03009 Ribosome biogenesis [BR:
stra03009
]
ATM98_00870
Enzymes [BR:
stra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ATM98_00870
Messenger RNA biogenesis [BR:
stra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATM98_00870
Ribosome biogenesis [BR:
stra03009
]
Prokaryotic type
rRNA helicases
ATM98_00870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AMP66336
UniProt:
A0A127TQZ5
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All DBs
Position
149908..151482
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AA seq
524 aa
AA seq
DB search
MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
EKIRTEDQTIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGA
HIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLF
SATMPEAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPE
LAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQIIENLTKK
RMKGLKPASAEEAFQAKKQVALKKIERDFADEAIRGNFDKFAKDARKLAAEFSPEELAMY
ILSLTVQDPDSLPEVEIAREKPLPFKPSGGGFGGKGKSGRGGRRGDDRRDRDRRGNGRRD
DYRKGGRSNDRFDKEKRYRKDHKKPRNTSSEKKTGFVIRNKGDK
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatttaatgaatttaatctttctgctgatttgttagcagaaatcgaaaaagcagga
tttgtagaagcaagtcctatccaagagcaaaccattcctttggctcttgaaggaaaagat
gttatcggacaagctcaaacaggtacagggaaaactgcagcctttggcttgccaaccctt
gaaaaaattcgtacagaagatcagaccattcaagctttggtcatcgcaccaacccgtgaa
ctagctgtgcaaagtcaggaagaactcttccgctttggtcgaagcaagggtgtaaaagtc
cgttctgtttatggtggttcaagtatcgaaaaacaaatcaaggctcttaaatcaggtgct
catatcgtagttggaacgcctggtcgtctcctagacttgatcaaacgcaaggccttgaag
ttacaagatattgaaacgctcatccttgacgaagcagatgagatgctcaacatgggcttc
cttgaggatattgaagccatcatctctcgtgtcccagaaaatcgtcaaaccttactcttt
tcagcaaccatgcctgaagctatcaaacgtatcggggttcaatttatgaaagaccctgag
catgtgaagattgcggctaaagagttgacaactgaactagtagatcagtactatatccga
gttaaggaacaagaaaaatttgacaccatgactcgtctcatggacgtggagcaaccagag
cttgcgatcgtatttggtcgtaccaaacgtcgtgtagatgaattgactcgtggtctgaag
atccgtggcttccgtgcagaagggattcatggagatcttgaccaaaacaaacgtcttcgt
gtcctccgtgatttcaaaaatggcaatctggatgtcctcgtagcaacagacgtagcggct
cgtggtttggatatttctggtgtgacccatgtctacaactatgatattccacaagatcca
gaaagctatgttcaccgtatcggccgtacaggtcgtgctggtaagtcaggtcaatcgatt
actttcgtagcaccaaatgagatgggctacctccaaatcatcgaaaacttgaccaagaaa
cgcatgaaaggactcaagcctgcaagtgcagaagaagccttccaagctaagaaacaggtt
gcactcaagaaaattgaacgtgactttgcggatgaagctattcgtggaaacttcgacaaa
tttgcaaaggatgctcgtaaattggctgcagaattcagcccagaagaattggccatgtac
atccttagcttgacagttcaggatccagatagtcttccagaagttgaaattgcgcgtgaa
aaaccattaccattcaaaccatctggtggtggatttggcggaaaaggcaagtctggtcgc
ggtggacgtcgtggtgatgaccgtcgagatcgtgatcgccgtggcaatggtcgtcgtgat
gactaccgaaagggtggccgttccaatgatcgttttgacaaagagaagcgttaccgcaag
gatcataaaaaacctcgtaatacttcaagcgagaagaaaacgggctttgtgattcggaac
aaaggagataaataa
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