Sporosarcina trichiuri: QWT68_01690
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Entry
QWT68_01690 CDS
T10169
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
strb Sporosarcina trichiuri
Pathway
strb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
strb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QWT68_01690 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
strb03019
]
QWT68_01690 (rnr)
03016 Transfer RNA biogenesis [BR:
strb03016
]
QWT68_01690 (rnr)
Enzymes [BR:
strb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
QWT68_01690 (rnr)
Messenger RNA biogenesis [BR:
strb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QWT68_01690 (rnr)
Transfer RNA biogenesis [BR:
strb03016
]
Prokaryotic type
tRNA degradation factors
QWT68_01690 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
S1CSD-TOTE-2
OB_PDCD11
OB_Dis3
vATP-synt_AC39
S1_RRP5
Penicillinase_R
DUF7646
CSN8_PSD8_EIF3K
RNase_II_C_S1
DUF3592
MarR
Motif
Other DBs
NCBI-ProteinID:
WJY27739
LinkDB
All DBs
Position
289127..291505
Genome browser
AA seq
792 aa
AA seq
DB search
MDTFEQQLEQQILSLMKEDAYKPLTVQEIQELLGMEQAAEFKELVKMLVHLEQKGVVIRS
RTDRYGLPERMNLVRGKFIGHAKGFGFVTPETEGMDDIFIPPTEVNTAMNGDTVLVRVAN
GSSGDRREGSIIRIAERKTTKVVGTYQDNRGFGFVIPDDKKLPMDIFIAKGDNLGAIEGH
KVVVEITEFPSDRKSATGKVIQILGHKNDPGVDILSIIYKHGIEIEFPDDVMKQTDNVPA
EIQEKDWFKRTDLRDVLTITIDGADAKDLDDAISLEKNADGTHTLSVHISDVSYYVTEHS
PLDNEAYERGTSVYLTDRVIPMLPHKLSNGICSLHPHVDRLTLTCRMTVDHNGKVTHHEI
YPSVINSDYRMTYQNVYKIVEEKDEALREEYAEIVPMLMDMADLMKILRQKREDRGAIDF
DFKESKIIVDDEGWPVDIKIMERTIAERMIEEFMLLANETVAEHFHWMQVPFMYRIHEDP
KTEKLQRLFEFLTNFGILVKGAGNKIHPRALQEITESVAGLPEETVISTMLLRSMQQAKY
YQASLGHFGLSTDFYTHFTSPIRRYPDLIVHRLIRTYLFEKDVSQTTIAHWDAELPEIAE
HSSEMERRAVDAERDTDALKKAQFMVDKVGEEFEGVISSVTNFGLFVELENTIEGLVHVS
YMTDDYYRFDDRSMMMIGEHTGKQYRIGDEVTVRVAAVKPEEASIDFEIADMKQKFHRTR
KEAPKVIHARGKSGGDSKSGKSGQSGQSGKPNGSGKKDSGGAPGKKNGGSQKKRFYEGVA
KKNKKQKPRKRK
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
ttggatacattcgaacaacaattggaacagcagatcttatcacttatgaaagaggatgca
tataagccgctgaccgtgcaggaaatccaggaattgctcggcatggaacaggcggcggaa
ttcaaggaactcgtcaagatgctcgtccacctggagcagaaaggtgtggtcatccgctcg
cggacggaccgctacggcctgccggagcgcatgaatctcgtgcgcgggaagttcatcggc
catgcgaagggattcggctttgtgacaccggagacggaggggatggatgatattttcatc
ccgccgacggaagtgaataccgccatgaacggcgacacggtccttgtccgcgtggcgaac
ggttcatccggcgaccgccgggaaggcagcatcatccgcatcgcggagcgcaagacgacg
aaagtggtcggaacgtaccaggataaccgcggcttcggcttcgtcatcccggacgataag
aaactgccgatggatatcttcatcgcaaaaggcgacaacttaggcgcgatcgaaggccac
aaagtcgtcgtggagatcactgaattcccaagcgaccggaaatcggcgacgggcaaagtg
atccagatcctcggccacaaaaacgatccgggtgtcgatatactctcgattatctacaag
cacggcatcgagatcgaatttccggacgacgtcatgaagcagaccgacaacgtgccggcg
gaaatccaggaaaaagattggttcaagcggaccgacctgcgcgacgtgctgacgatcacg
atcgacggcgcggatgcgaaggacctggatgacgcaatctcgctcgagaagaatgcagac
ggcacgcatacactgtccgtccatatttcggacgtcagctattatgtgacggaacactca
ccgctcgataacgaagcatatgagcgcgggacaagtgtctacttgacggaccgcgtcatc
ccgatgctgccgcacaagctgtcgaacggcatctgttcactccatcctcatgtggaccgt
ctgacattgacgtgccgcatgacggttgaccataacgggaaagtgacgcaccacgagatc
tacccgagtgtcatcaattccgattaccggatgacgtaccagaacgtctataaaatcgtg
gaagagaaagacgaagccctgcgtgaagaatatgcagagatcgtaccgatgctgatggat
atggcagatctcatgaagatcctgcgccagaagcgggaagaccgcggtgccatcgatttc
gacttcaaggaatcgaagatcatcgtcgatgacgaaggctggcccgtcgacatcaagatc
atggaacggacgattgcggagcgcatgatcgaggagttcatgctgctggcgaacgaaact
gtcgcagagcacttccactggatgcaggtgccgttcatgtaccggatccacgaagacccg
aagacggagaaactgcagcggctgttcgagttcctgaccaacttcggaattctcgtcaaa
ggggcgggcaataagatccatccgcgcgcgctccaggagatcaccgaatcggttgcaggc
cttccggaagaaacggtcatatcgacgatgctcctgcgttcgatgcagcaggcgaagtat
tatcaggcgagtcttggacacttcggcctgtcgacggatttctatacacacttcacatca
ccgatccgccgctatccggacttgatcgtccaccggctcatccggacgtacctgttcgaa
aaggatgtctcacagacgacgatcgcccattgggatgcggagctgccggaaatcgcggag
cactcatccgagatggaacgccgcgcagtcgatgcggaacgcgataccgatgcactgaag
aaagcgcagttcatggtggacaaagtcggtgaggagttcgaaggggtcatttcatccgtc
acgaacttcggattattcgtcgaactcgagaatacgatagaaggactcgtgcacgtcagc
tacatgacggacgattattaccgcttcgacgaccggtcgatgatgatgatcggcgagcac
acgggcaagcaataccgcatcggcgatgaagtcaccgtgcgggtggcggctgtgaaaccg
gaagaggcgtcaatcgatttcgagatcgccgacatgaagcagaaattccaccggacgcgg
aaagaagcgccgaaagtgatccatgcgcgcggcaaatcaggcggcgacagcaaatccggc
aagtccggacagtccggtcagtccggaaaaccaaacggctccggcaagaaagacagcggg
ggagcacctggtaagaagaacggcggcagccagaagaaacgcttctatgaaggcgtcgcg
aagaagaacaagaaacagaaaccgagaaaacgaaagtga
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