Sporosarcina trichiuri: QWT68_13260
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Entry
QWT68_13260 CDS
T10169
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
strb Sporosarcina trichiuri
Pathway
strb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
strb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QWT68_13260 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
strb03021
]
QWT68_13260 (rpoC)
03400 DNA repair and recombination proteins [BR:
strb03400
]
QWT68_13260 (rpoC)
Enzymes [BR:
strb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QWT68_13260 (rpoC)
Transcription machinery [BR:
strb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QWT68_13260 (rpoC)
DNA repair and recombination proteins [BR:
strb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QWT68_13260 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WJY27002
LinkDB
All DBs
Position
2640421..2644020
Genome browser
AA seq
1199 aa
AA seq
DB search
MVDVNNFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRQKVRRERMGHIELAAPVTHIWYFKGIPSRMGLILDM
TPRALEEVIYFASYVVVDPADTPLERKQLLSEKEYRLYREKYGTKFTALMGAEAIEQLLS
AIDLDKETESLKEELKTVQGQRRTRAIRRLEVVESFRNSGNRPEWMVLEVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALVDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MAIELFKPFVMKELVERGLAHNIKSAKRKIERLHSEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPMLVEGRAIQLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEREGAVGEGKTFSNVNEALIAYQNGHVHLHSRIAIQ
AGSLKNPTFTEEQNRKLLITTVGKLVFNEILPESFPYINEPTQQNLQVETPDMYFVPGTT
DVREHIKNAEVVSPFVKKYLGNIIAEIFRRFHITETSKMLDRMKNLGFKYSTRAGITVGI
SDIVVLPDKHDILQDAQEKVDKVTQQFRRGLVTEEERYDRVISYWSHAKDVIQDKLMGSL
ENTNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDRGLEITALTEGVELIESLE
ERIEGRHAKKRVLHPETGEVLAEKDQLITADVAQTIVNAGITSMSIRSAFTCNTKHGVCK
KCYGINLATGETVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITSGLPRIQEIF
ESRNPKGQAVISEIKGIVTDIDEIREGQKEITIKGDVETRKYLAPYNGRLKVAVEDTVER
GQALTEGSVDPKELIVVKDVSTVQEYLLKEVQKVYRMQGVEIGDKHVEVMVRQMMRKVRV
IEAGDTELLPGSLLDIHQFSDANTEVLKTGKLPATARPVILGITKASLETESFLSAASFQ
ETTRVLTDAAIKGKTDELLGLKENVIIGKLVPAGTGMQRYRGIELDREEELEEDAVSAE
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttggtagatgttaataattttgagtatatgaaaatcgggctcgcttcaccggataagatc
cgttcgtggtcttacggggaagtcaaaaaacccgaaacgatcaattaccgcacattgaag
cctgaaaaagatgggttgttctgcgagcgtattttcggaccgacaaaggactgggagtgc
cattgcggcaagtataagcgcgttcgttacaaaggcgttgtctgtgaccggtgcggcgtg
gaagtcacccgccagaaagtgcgccgggaacggatgggccacatcgaacttgcagcgcct
gtcacacacatctggtatttcaaagggatcccgagccggatgggtctgatcctggatatg
acaccgcgtgcgttggaggaagtcatctacttcgcttcgtatgttgtcgtcgatccggct
gatacgccgcttgagcggaaacagctgctgtccgagaaggaatatcgtctgtaccgtgag
aagtacggcacgaaattcacggcgctcatgggagcggaagcgatcgaacagcttctgtcc
gcaatcgatctcgataaagagacggagagtctgaaagaagaactgaaaacagtccaggga
cagcgccgcacacgtgcgatccgccgcctggaagttgtcgagtccttccgtaactcagga
aaccgtccggaatggatggttctcgaagtgctgccggtcatcccgccggaactccgtccg
atggtacagctggatggcggccgttttgcaacgtccgacctgaacgacttgtaccgccgc
gtcatcaaccggaacaaccgcctgaagcgtcttctggacctgggggcacctggcatcatc
gtgcagaatgagaagcggatgctgcaggaggccgttgatgctcttgtcgacaatggccgc
cgcggccgtccggtaaccggtccgggcaaccgtccgctgaaatccctctcgcacatgctg
aaagggaagcaggggcgtttccgtcagaaccttctcggtaagcgtgtcgactactccggc
cgttccgttatcgtcgtcggaccgaacctgaagatgtatcagtgcggtctgccgaaagaa
atggcgatcgaactgttcaaaccgttcgtcatgaaagagcttgtcgaacgcggacttgca
cataacatcaagagtgcgaagcgtaagatcgaacgcctccattccgaagtatgggatgtg
ctggaagaggtcatcaaggaacacccagttcttctgaaccgggcccctacgctgcaccgt
ctcggcatccaggcattcgagccgatgctcgttgaagggcgcgccattcagctgcacccg
ctcgtctgtacggcatacaacgccgacttcgacggtgaccagatggctgtccacgtgccg
ctttccgcggaagcgcaggcggaagcacggctcctgatgcttgccgcgcagaacatcttg
aacccgaaagacggaaaacctgtagttacaccgtcccaggatatggttctcggtaactat
tacctgacactggagcgtgaaggtgcagtaggagaagggaaaacattcagcaatgtgaat
gaggcgctgatcgcctatcagaacggtcatgtccatctccactcccgtatcgccatccag
gcaggctcgctgaaaaacccgacattcacggaagagcagaaccgcaaactgctgatcaca
actgtcggtaagctggtattcaatgaaattctgccggaatcattcccgtatatcaacgag
ccgacccagcagaacctccaggtggaaacgccggatatgtatttcgtcccggggacaact
gatgtacgggaacatattaaaaatgctgaagtcgtttcgccgttcgtgaaaaaatatctt
ggaaatatcattgcggagatcttccgccgtttccacatcaccgaaacgtcgaagatgctc
gaccgcatgaaaaacctgggattcaaatattccacacgtgccggcatcacggtaggtatc
tccgatatcgtcgttcttccggacaaacacgatatactgcaggatgcacaggagaaagtg
gacaaagtgacacagcagttccgccgcggactcgtgacggaagaagagcggtatgaccgc
gtcatctcgtattggagccacgcgaaggatgtcatccaggacaaactgatgggctccctt
gaaaacacaaacccgatcttcatgatgagtgactcgggggcacgtggtaacgcgtcgaac
ttcacgcagctcgcaggaatgcgtggactgatggccaacccggctggacgtattatcgaa
ctgccgatcaagtcatcgttccgtgaaggtctgacagtactcgagtacttcatctctaca
cacggtgcacgtaaaggtcttgcggatacagctctgaagacagccgactccggttacctg
acacgccgcctcgtagatgttgcacaggatgtcatcgtccgcgaagacgactgcggaacc
gaccggggacttgagattaccgcgctgacagaaggtgtggaactgatcgaatcccttgag
gaacggatcgaaggccggcacgcgaagaagagagtgctccatcctgaaacaggtgaagtg
cttgcggaaaaagatcagctcatcacagccgacgttgcacagactatcgtcaatgccggt
attacatcgatgtcgatccgttcggcattcacatgtaacacgaagcacggtgtgtgtaag
aaatgctacggcatcaacctggcgacaggcgaaacggttgaagtgggagaagcggtcggt
attatcgctgcccagtcgatcggtgagccgggaacccagctgacgatgcgtacattccac
acaggcggtgttgcaggagatgacatcacatcaggtcttccgcgtatccaggagatcttc
gaatcgcggaacccgaaaggtcaggctgtcatctcggaaatcaaaggtatcgttacggat
atcgacgaaatccgcgaaggacagaaagaaatcactatcaaaggcgacgtcgagacgcgc
aagtacctcgcgccgtataacggccgtctgaaagtggctgtggaagatacggtcgaacgc
ggtcaggcactgacggaaggctccgtcgatccaaaagaactgattgtcgtcaaagacgtt
tcgactgtacaggaatacttactgaaagaagtacagaaagtataccggatgcagggtgtt
gaaatcggcgacaaacacgttgaagtcatggtccgtcaaatgatgcggaaagtgcgtgtc
atcgaagcgggcgatacggaactgctgccgggatcacttctggacatccaccaattctcg
gatgccaacacagaagtcctgaaaacgggcaaactgccggcaacagcacgtcctgtcatc
ctcggaatcacgaaagcgtcgcttgaaacggaatccttcctttcggccgcgtccttccag
gaaacgacacgagtcctcaccgacgcagccatcaaaggcaaaactgatgaactgctcggc
ttgaaagagaacgtcatcatcggtaaactcgtaccggcgggaacaggcatgcagcgctac
cgcggcattgaacttgaccgcgaagaagaacttgaagaagacgcagtatctgcagagtaa
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