Sporosarcina trichiuri: QWT68_14135
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Entry
QWT68_14135 CDS
T10169
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
strb Sporosarcina trichiuri
Pathway
strb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
strb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QWT68_14135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
strb03019
]
QWT68_14135
03009 Ribosome biogenesis [BR:
strb03009
]
QWT68_14135
Enzymes [BR:
strb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QWT68_14135
Messenger RNA biogenesis [BR:
strb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QWT68_14135
Ribosome biogenesis [BR:
strb03009
]
Prokaryotic type
rRNA helicases
QWT68_14135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
ERCC3_RAD25_C
AAA_22
DUF4422
NABP
GRP
Motif
Other DBs
NCBI-ProteinID:
WJY27167
LinkDB
All DBs
Position
2805988..2807493
Genome browser
AA seq
501 aa
AA seq
DB search
MTNFSELNISKSTQDSLKRMGFEEATPIQEGTVTFGMEGKDVIGQAQTGTGKTAAFGIPI
IEKIDTSNPAVQALVIAPTRELAIQVSEEIYKIGYGKRARILSVFGGQEISRQIRALRNN
PQIVVGTPGRILDHINRKTLKLDGVQTLVLDEADEMLNMGFIEDINAILSNVPDERQTLL
FSATMPGPIRKIAETFMKDPEIVKIKSKEMTVENIEQFFVKAHEREKFDILSRLLNVHQP
ELAIVFGRTKRRVDELAHALNIRGYLAEGIHGDLTQAKRMSVLRQFKENKIDVLVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGMAITFVTPREMGYLRIVEETTK
KRMKPLQPPTSDEALMGQQKLAVDTLEEAVQKNELNDYTQFATDLLSKYDATDLVAAALK
NLTKEPDATPVTITEERPLPSRRSSGGGRGGYKGNRSGGNRSFGGGRGYGGNRRSSGGRD
GGRRDGGRRESGSRDRGRSDR
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
ttgacgaatttttcagaactgaatatcagtaaatcaacacaagactcactaaagaggatg
ggcttcgaagaggccactccgatccaggaaggcacagtcacattcggtatggaaggcaag
gacgtcatcggccaggcccaaacaggtacaggtaagacagccgcattcggtattccgatc
atcgaaaagatcgatacgagcaatccggctgtacaggcgcttgtcattgcaccgacccgt
gaacttgccatccaggtatccgaagagatctacaaaatcggctatgggaaacgcgcacgc
atcctttccgttttcggaggtcaggagatttcacgccagatccgcgcgctccgcaacaat
ccgcagatcgttgtcggaacaccgggccgtatactcgaccacatcaaccggaagacgctg
aagcttgacggcgtgcagacgctcgtattggacgaggcggatgaaatgctcaacatgggc
ttcatcgaagatatcaacgcaatcctttcgaacgttccggatgagcgccagacactcctg
ttctcggcaaccatgccgggaccgatccgcaaaatcgcggaaacgttcatgaaagatcct
gaaatcgtaaagatcaagtcgaaggaaatgactgtcgagaacatcgagcagttcttcgtc
aaagcacacgagcgggagaagttcgacatcctgtcccgtctgctgaacgtccaccagccg
gaacttgccatcgtattcggccgcacgaagcgccgggtagacgaactggctcacgcgctc
aacatccgcggataccttgcggaaggcatccacggtgacttgacacaggcgaaacggatg
tccgtattgcgccagttcaaggagaacaagatcgacgtgctggttgcaacagacgttgca
gcccgcggacttgatatttccggcgtaacgcacgtttacaacttcgatatcccgcaagat
cctgaaagctacgtacaccgtatcggccgtacaggccgtgcagggaagagcgggatggcg
atcacgttcgtgacaccgcgtgaaatgggctacttgcgcatcgtcgaggaaacaacgaag
aaacgcatgaagccgcttcagccgccgacatcggatgaagcactgatgggtcagcagaaa
ctggctgtcgacacactcgaagaagcagtccagaagaacgaattgaacgattacactcaa
ttcgcgacggacctgctgagcaaatatgatgcaaccgaccttgtagcggctgcattgaaa
aacctgacaaaagagccggatgcaacaccggttacgattacggaagaacgtccattgcct
tcacgccgatcttctggcggcggacgcggcggttacaagggcaaccgcagcggcggcaac
cgttcattcggcggaggccgcggatatggcggcaaccgacgcagcagcggcggccgtgat
ggcggacgtcgtgatggcggacgccgtgaaagcggcagccgggatcgcggccgttcggat
cgataa
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