Sporosarcina trichiuri: QWT68_15460
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Entry
QWT68_15460 CDS
T10169
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
strb Sporosarcina trichiuri
Brite
KEGG Orthology (KO) [BR:
strb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
strb03009
]
QWT68_15460 (rlmD)
Enzymes [BR:
strb01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
QWT68_15460 (rlmD)
Ribosome biogenesis [BR:
strb03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
QWT68_15460 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
PrmA
MTS
TRM5-TYW2_MTfase
Cons_hypoth95
Methyltransf_15
RrnaAD
Methyltransf_11
Methyltransf_12
N6_Mtase
Methyltransf_32
TPMT
N6_N4_Mtase
Methyltransf_23
TRM
Motif
Other DBs
NCBI-ProteinID:
WJY27415
LinkDB
All DBs
Position
3038779..3040149
Genome browser
AA seq
456 aa
AA seq
DB search
MTYAVHQNDRLVVQIEDLTHDGSGVGKVQGYPLFIPGALPGEEVEVKVGKTLKNYGFAKL
LNILTPSPDRITGPCHVYPECGGCQIQHLTYDAQLRQKQKTVRDVMDRIAKLPDVPVHPT
LGMDDPWRYRNKSQIPFGEREGRIVSGFYRSKTHHIVDTDVCIIQSTEADDLMAMLKREL
QILGIDTYDERTHKGFLRHLVVRKARATGELMVVLVTARRKFPEAAQVIDAIKRTVPDVT
SIMQNVNTQKTNVIFGDQTLCLYGKDVIIDTIGDVDFEISARSFYQVNPVQTETLYSKAL
EYAQLTGQETVIDAYCGIGTISLFLAKQAKEVYGVEIVPQAIEDAKRNAVLNGIGNAHFE
TGASEDVIPKWYNEGKTFDVLVVDPPRKGCDEKLLETILTHKPARIVYVSCNPATLARDL
RILEDGGYKTQEVQPVDMFPHSTHVEVISNIEYKGD
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgacctatgcagtccaccaaaacgacagactcgtcgtccaaatagaagacctcacgcac
gacggctccggcgtcggcaaagtgcagggctatccgcttttcatccccggcgcgctgcct
ggcgaggaagtcgaagtaaaagtcggcaagacactgaagaactacggcttcgccaagctg
ctcaacatcctcacgccgtcccccgaccgcatcacgggcccgtgccatgtgtatccggaa
tgcggcggctgccagatccagcacctgacgtatgacgcacagctcagacagaaacagaaa
accgtccgggacgtcatggaccgcatcgccaagctcccggacgtccctgtgcatccgacg
ctcggcatggacgacccatggcgttaccgcaacaaatcccagatcccgttcggagagcgc
gagggccggatcgtctccggcttctaccgctcaaaaacgcatcacattgtcgacaccgac
gtctgtatcatccagagcaccgaagccgacgacctcatggccatgctgaagcgcgagctg
cagatactcggtatcgacacctacgacgaacgcacgcacaaaggcttcctgcgccacctc
gtcgtccggaaagcacgcgcgaccggcgagctcatggtcgtcctcgtcaccgcccgccgc
aaattcccggaagcggcgcaagtcatcgacgccatcaaacgcaccgtgccggacgtcacg
tccatcatgcagaacgtcaacacccagaagaccaacgtcatcttcggcgatcaaaccctc
tgcctctacggcaaggacgtcatcatcgacacgatcggcgacgtcgactttgaaatttcg
gcccggtcgttctaccaggtgaaccccgtccagacggagacgctgtacagcaaggcactc
gaatatgcccagctcaccggacaggaaaccgtcatcgacgcctactgcggcatcggcacg
atttcgctgttcctcgccaagcaggcgaaagaggtatacggcgtcgaaatcgtcccgcag
gcgatcgaagacgcaaaacggaacgccgtcctgaacggcatcggcaacgcccattttgaa
acaggcgcatcggaagacgtcattccgaaatggtacaacgaaggcaagacattcgacgtc
ctcgtcgtcgacccgccgcgcaaaggctgcgacgaaaaactgctggaaacgatcctcacc
cacaaaccggcccgtatcgtctatgtctcctgcaatccggccacgctcgcccgcgacctg
cgcatcctggaggacggcggctacaagacacaggaagtgcagccggtggatatgttccca
catagtacacacgtcgaagttatcagcaacatagaatataaaggggactaa
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