Streptomyces sp. CNQ-509: AA958_21060
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Entry
AA958_21060 CDS
T03968
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
strc
Streptomyces sp. CNQ-509
Pathway
strc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
strc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AA958_21060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
strc03021
]
AA958_21060
03400 DNA repair and recombination proteins [BR:
strc03400
]
AA958_21060
Enzymes [BR:
strc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AA958_21060
Transcription machinery [BR:
strc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AA958_21060
DNA repair and recombination proteins [BR:
strc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AA958_21060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
AKH84267
LinkDB
All DBs
Position
4891131..4895057
Genome browser
AA seq
1308 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRTWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITWVDDERRQRDLSSLEAQISVERQQIEQRRDGDLEARAKKQEAD
LAELEAEGAKADVRRKVREGGEREMKQLRDRAQRELDRLDEVWNRFKNLKVQDLEGDELL
YRELRDRFGTYFQGGMGAAALQKRLESFDLDEEAEKLREIIRTGKGQKKTRALKRLKVVS
AFQHTRNSPNGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDEIEGEKKGE
DRSFASVAEAIMAFDAGELSLQANVDIRFPVGSVPPRGWTPPVAEADDGVGGGAAADSDW
QPGDPFRLRTTLGRALFNELLPEDYPFIHYTVGKKQLSEIVNDLAERYPKVLVAQTLDNL
KSSGFYWATHSGVTIAISDVVVPEAKKEIIAGYEAQDEKVQKQYERGLITKDERTQELIA
IWTKATNEVAEAMNENFPKTNPIFMMVNSGARGNMMQMRQIAGMRGLVSNAKNETIPRPI
KSSFREGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRG
LKLEIASVGADGVLRKAEDAETSVYARCLAEDIVVDGKVLAPAGTDLGDVLIDELIRHGV
ATVKTRSVLTCESAVGTCAMCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHT
GGVAGEDITQGLPRVVELFEARTPKGVAPISEAAGRVRIEETEKTKKVVVTPDDGSEEVA
YGVSKRARLTAGEGDHVEVGQKLTVGTENPHDVLRILGQRAVQVHLVGEVQKVYNSQGVS
IHDKHIEIIIRQMLRRVTIIESGDAELLPGELVERSKFEQENRRVVAEGGQPASGRPQLM
GITKASLATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYR
NIRVEPTEEAKAAMYSTVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcggatcggcctggcgaccgcggacgacatc
cggacctggtcccacggcgaggtcaagaagcccgagaccatcaactaccgcaccctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgcgccc
gtcacgcacatctggtacttcaagggcgtcccgtcgcgcctcggctacctgctcgacctg
gcgccgaaggacctggagaaggtcatctacttcgccgcctacatgatcacgtgggtggac
gacgagcgccgccagcgcgacctgtcgtcgctggaggcccagatctccgtcgagcgccag
cagatcgagcagcgccgcgacggcgacctggaggcccgcgccaagaagcaggaagccgac
ctggccgagctggaggccgaaggcgccaaggccgacgtgcgccgcaaggtgcgcgagggc
ggcgagcgcgagatgaagcagcttcgcgaccgggcccagcgcgagctggaccgcctggac
gaggtgtggaaccgcttcaagaacctcaaggtccaggacctggagggcgacgagctgctc
taccgcgagctgcgcgaccgcttcggcacgtacttccagggcggcatgggcgccgcggcg
ctccagaagcgcctggagtccttcgacctggacgaggaggcggagaagctccgcgagatc
atccgtaccggcaagggccagaagaagacccgtgccctgaagcggctgaaggtcgtctcc
gcgttccagcacacccgcaacagccccaacggcatggtgctggactgcgtcccggtgatt
ccgccggacctgcgtccgatggtgcagctcgacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccggctgaagcggctgctcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcgcatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccggccggtgaccgggcccggcaaccgcccgctcaag
tcgctgtccgacatgctcaagggcaagcagggccgcttccggcagaacctgctcggcaag
cgcgtcgactactcggcccgttccgtcatcgtcgtcggcccgcagctcaagctccaccag
tgcggcctgcccaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtggatctcaaccacgcgcagaacatcaagagcgccaagcgcatggtcgagcgcggccgc
acggtcgtgtacgacgtgctggaagaggtcatcgccgagcacccggtgctgctgaaccgg
gcgccgacgctgcaccgcctcggcatccaggcattcgagccgcagctcgtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggcgaccag
atggccgtgcacctgccgctctccgcggaggcccaggccgaggcccgcatcctcatgctg
tcctcgaacaacatcctcaagccggccgacggccgccccgtcaccatgcccacccaggac
atggtgctcgggctgttcttcctcaccaccgacgagatcgagggtgagaagaagggcgag
gaccgctcgttcgcgtcggtcgccgaggcgatcatggccttcgacgccggcgagctgtcg
ctccaggcgaacgtcgacatccggttccccgtcggctccgtgccgccgcgcggctggacg
ccgccggtggccgaagcggacgacggcgtcgggggaggcgccgcggccgactcggactgg
cagccgggcgacccgttccggctccgcaccaccctgggccgcgcgctcttcaacgagctg
ctgcccgaggactacccgttcatccactacaccgtcggcaagaagcagctctccgagatc
gtcaacgacctcgccgagcgctacccgaaggtcctcgtcgcgcagaccctggacaacctg
aagtcctcgggcttctactgggccacccactccggcgtcaccatcgccatctcggacgtg
gtcgtgccggaggcgaagaaggagatcatcgccgggtacgaggcccaggacgagaaggtc
cagaagcagtacgagcgcggcctgatcaccaaggacgagcgcacccaggaactcatcgcg
atctggaccaaggcgaccaacgaggtcgccgaggccatgaacgagaacttcccgaagacc
aacccgatcttcatgatggtcaactcgggtgcgcgcggaaacatgatgcagatgcgccag
atcgcgggtatgcgcggcctggtgtccaacgccaagaacgagaccatcccgcggccgatc
aagtcctcgttccgcgagggcctgtccgtgctggagtacttcatctccacgcacggcgcc
cgcaagggtctcgccgacaccgcgctgcgcaccgccgactcgggttacctgacccgtcgt
ctggtggacgtctcgcaggacgtgatcatccgcgaggaggactgcggcaccgaccgcggc
ctcaagctggagatcgcgtcggtcggcgccgacggcgtgctgcgcaaggccgaggacgcc
gagacctcggtgtacgcgcgctgcctcgccgaggacatcgtcgtcgacggcaaggtgctg
gccccggccggcaccgacctgggcgacgtgctcatcgacgagctgatccggcacggcgtg
gcgacggtcaagacccgctcggtgctcacctgcgagtccgccgtcggcacctgcgccatg
tgctacggccgttcgctggccactggcaagctggtggacatcggcgaggccgtgggcatc
atcgccgcccagtccatcggcgagcccggcacccagctcacgatgcgcaccttccacacc
ggcggtgtggcgggtgaggacatcacccagggtctgccgcgtgtcgtcgagctcttcgag
gcccgtacgcccaagggcgtggcgccgatctcggaggccgcgggccgggtgcggatcgag
gagacggagaagaccaagaaggtcgtcgtcacccccgacgacggttccgaggaggtcgcg
tacggcgtgtccaagcgcgcccgtctcaccgccggcgagggcgaccacgtcgaggtcggc
cagaagctgaccgtcggtacggagaacccccacgacgtgctgcgcatcctgggccagcgg
gccgtgcaggtccacctggtcggcgaggtgcagaaggtctacaacagccagggcgtgtcc
atccacgacaagcacatcgagatcatcatccggcagatgctgcgccgggtgacgatcatc
gagtccggcgacgcggagctgctgccgggcgagctggtcgagcgctcgaagttcgagcag
gagaaccggcgcgtggtggccgagggcggccagcccgcctccggccggccgcagctcatg
ggcatcacgaaggcgtcgctggccaccgagtcgtggctgtcggcggcgtcgttccaggag
acgacccgggtgctgaccgacgcggcgatcaacgccaagtcggactccctgatcggcctc
aaggagaacgtgatcatcggcaagctgatcccggccggtacgggcctgtcccgctaccgc
aacatccgggtggagcccaccgaggaggcgaaggccgcgatgtactcgaccgtcggctac
gacgacatcgactactcgcccttcggcaccggctccggccaggcggtcccgctggaggac
tacgactacggcccgtacaaccagtaa
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