Streptomyces sp. CCM_MD2014: NI25_10145
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Entry
NI25_10145 CDS
T04862
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
strd
Streptomyces sp. CCM_MD2014
Pathway
strd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
strd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NI25_10145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
strd03019
]
NI25_10145
03400 DNA repair and recombination proteins [BR:
strd03400
]
NI25_10145
Enzymes [BR:
strd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NI25_10145
Messenger RNA biogenesis [BR:
strd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NI25_10145
DNA repair and recombination proteins [BR:
strd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NI25_10145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
Pribosyltran
AAA_22
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AIV33810
UniProt:
A0A0N6ZHX8
LinkDB
All DBs
Position
complement(2371047..2373206)
Genome browser
AA seq
719 aa
AA seq
DB search
MDHEELRTEADAVLAELVGDREGSARLREDQWQAVAALVEEHRRALVVQRTGWGKSAVYF
VATALLRRRGVGPTVIVSPLLALMRNQVESAARAGIRARTINSANSEEWETIYGEVERGE
TDVLLVSPERLNSVDFRDQVLPRLAATTGLLVVDEAHCISDWGHDFRPDYRRLRTMLAEL
PAGVPVLATTATANARVTADVAEQLGTGGGDALVLRGPLDRESLRLGVLELPDAAHRLAW
LGERLGDLPGSGIIYTLTVAAAEEVASFLRQRGHPVASYTGKTENADRLQAEEDLLANRV
KALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRGVDHADVLLLPGREDEAI
WAYFASVGFPPEEQVRRTLAVLEDAGRPMSLPALEPLVDLRRSRLETMLKVLDVDGAVKR
VKGGWTATGRPWTYDAERYAWVARQRQAEQQAMRDYVATTGCRMEFLQRQLDDEKAAPCG
RCDTCAGPWLDPAVPSAALAAATGELDRPGVEVEPRKMWPTGLAAVGMDLKGRIPVGQQA
LTGRALGRLSDIGWGNRLRPLLSAQAADGPVPDDVLDAVVTVLADWARSPGGWAGGSPDA
LARPVGVVAMPSRTRPRLVSSLAGGVARVGRLPLLGSLAHTSHAGEHAAHRSNSAQRLRA
LADSFTVPDELATALAGVSGPVLLVDDFTDSGWTLAVGARLLRQAGADQVLPLVLALAG
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggaccacgaggaactccgtaccgaagccgacgccgtcctcgccgaactggtcggcgat
cgcgagggctcggcacggctgcgggaggaccagtggcaggccgtggcggccctggtggag
gagcaccggcgcgctctcgtggtgcagcgcaccggctggggaaagtcggccgtgtacttc
gtagccaccgcgctgctccgccggcgtggcgtgggtcccacggtgatcgtctcgccgctg
ctggcgctgatgcgcaaccaggtcgagtcggccgcgcgggcggggatccgggcgcgcacg
atcaactcggccaactcggaggagtgggaaacgatctacggggaggtcgagcggggcgag
accgacgtcctcctcgtgagcccggagcgcctcaattccgtggacttccgggatcaggta
ctgccgaggctcgcggccacgaccggtctgctcgtggtggacgaggcgcactgcatctcc
gactggggccacgacttccgccccgactaccgccggctgcgcaccatgctggccgagctg
ccggccggggtgccggtgctggccaccacggcgaccgccaacgcccgggtcacggccgat
gtcgcggagcagctgggcacgggcggcggcgacgccctggtgctgcgcgggccgctcgac
cgggagagcctgcggctgggcgtgctcgagctgccggacgcggcgcaccggctggcgtgg
ctgggggagcggctgggggacctgcccggctccgggatcatctacacgctgaccgtggcg
gcggccgaggaggtcgcgtcgttcctgcggcagcgcggacatccggtggcctcctacacg
gggaagacggagaacgccgaccggttgcaggcggaggaggacctgctggcgaaccgggtg
aaggcgctcgtggcgacctcggcgctcggcatgggcttcgacaagcccgacctggggttc
gtcgtgcacctggggtcgccctcgtcgcccatcgcgtactaccagcaggtcgggcgtgcg
ggacgcggcgtggaccatgcggacgtcctgctgctgccggggcgggaggacgaggcgatc
tgggcgtacttcgcctcggtgggcttcccgcccgaggagcaggtgcggcgcacgctggcg
gtgctggaggacgccgggcggccgatgtcgctcccggcgctcgaaccgttggtggatctc
cggcggtcgcggctggagacgatgctcaaggtcctggacgtggacggcgcggtcaagcgg
gtgaagggcggctggaccgccacgggccggccgtggacgtacgacgcggagcggtacgcg
tgggtggcccggcagcggcaggcggagcagcaggccatgcgggactacgtcgcgaccacc
ggatgccggatggagttcctgcagcgacaactggacgacgagaaggcggccccgtgcggt
cgctgcgacacctgcgccgggccctggctcgacccggccgtcccgtccgcggccctcgcg
gccgcgacgggcgagctggaccgccccggtgtggaggtcgagccgcgcaagatgtggccg
accgggctcgccgcggtgggcatggacctcaagggccggatcccggtgggtcagcaggcg
ctcaccggccgggcgctggggaggctgtcggacatcggctggggcaaccggctgcgcccg
ctcctgtcggcgcaggcggcggacggaccggtcccggacgacgtgctggacgccgtcgtg
acggtgctggccgactgggcccgctccccgggcggctgggccgggggctctcccgacgcc
ctggcgcggcccgtgggcgtcgtcgccatgccctcccgcacccgtccccggctggtctcc
tcactggccggcggagtggcacgggtcggcaggctcccgctgctgggcagcctcgcccac
acctcccacgccggcgagcacgccgcccaccgcagcaactccgcccagcggctgcgcgcc
ctggcggattcgttcaccgtgccggacgagctcgccacggccctggccggcgtctccggc
ccggtcctgctcgtcgacgacttcaccgactccggctggacgctggccgtgggcgcacgc
ctcctgcgccaggccggtgccgaccaggtgctcccgctggtcctcgccctggccggatag
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