Streptomyces sp. CCM_MD2014: NI25_34295
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Entry
NI25_34295 CDS
T04862
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
strd
Streptomyces sp. CCM_MD2014
Pathway
strd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
strd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NI25_34295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
strd03021
]
NI25_34295
03019 Messenger RNA biogenesis [BR:
strd03019
]
NI25_34295
Transcription machinery [BR:
strd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NI25_34295
Messenger RNA biogenesis [BR:
strd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NI25_34295
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
DUF3086
Spore_III_AA
ATPase_2
AAA
NACHT
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIV37971
LinkDB
All DBs
Position
complement(7708385..7709524)
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AA seq
379 aa
AA seq
DB search
MTTTLEHPPVQQSPADVASGVLDIEAGGKGRLRGEGLRPDPSDLALSPALIRRHGLRRGD
LVEGVRGDRRTLTEVVRVNGRTPDRIGGRRHFADLTPLHPHERLRLEHPAAGLAGRVTDL
MTPVGKGQRGLIVAPPKTGKTVLLQQIAAAVAGNHPEARLMVVLLDERPEEVTDMRRSVR
GDVYASTFDQGAKQHIALAELVIERAKRLVEAGEDVVILLDSLTRLCRAHNNAASSGGRT
LSGGVDAAALLGPKRFFGAARKAEEGGSLTILATALVETGSRADDFYFEELKSTGNMELR
LSRDPASRRVFPAVDLTGSGTRREELLLSAAETTAVRGLRRALGTRDGQSGLETLLERLR
RTPDNATFLRQVQPTLPAD
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccacactcgaacacccccctgtacagcagtccccggccgacgtcgcgagcggt
gtcctcgacatcgaggcgggcggcaagggccgcctgcggggcgaaggcctgcggcccgac
ccctccgacctcgccctctcccccgcgctgatccgccggcacgggctgcgcaggggcgac
ctcgtggagggcgtgcgcggcgaccggcgcaccctgaccgaggtcgtccgcgtcaacggc
cgtacgccggaccggatcggcggccggcggcacttcgccgacctgaccccgctgcacccg
cacgagcggctgcggctcgaacacccggcggccggcctcgccggacgcgtcaccgacctc
atgaccccggtcggcaaggggcagcgcggcctgatcgtggctccgccgaagaccggcaag
accgtcctcctgcagcagatcgccgccgccgtggccggcaaccaccccgaggcacggctg
atggtggtgctgctcgacgaacgtcccgaggaggtcaccgacatgcggcgctcggtgcgg
ggggacgtgtacgcctcgaccttcgaccagggcgccaagcagcacatcgcactcgccgag
ttggtgatcgagcgggccaagcggctcgtcgaggccggtgaggacgtcgtcatcctcctc
gactccctcacccggctgtgcagggcgcacaacaacgccgcctcgtccggcggccgcacc
ctcagcggcggtgtcgacgcggcggcactgctgggccccaagcggttcttcggcgccgcc
cgcaaggccgaggagggcggctccctcaccatcctcgccaccgcactggtcgagaccggc
tcgcgcgccgacgacttctacttcgaggaactcaagagcaccggcaacatggaactgcgg
ctgagccgggaccccgcctcccgccgcgtcttccctgccgttgacctgaccggctcgggc
acccggcgcgaggaactcctgctgtccgccgccgagacgaccgccgtgcgcgggctgcgg
cgggccctggggacgcgggacgggcagtcgggcctggagaccctgctggagcggctgcgc
cgcacgccggacaacgcgaccttcctgcgacaggtacagccgacgctgcccgcggactga
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