Streptomyces sp. 769: GZL_05341
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Entry
GZL_05341 CDS
T03587
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
stre
Streptomyces sp. 769
Pathway
stre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
stre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GZL_05341
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stre03400
]
GZL_05341
Enzymes [BR:
stre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GZL_05341
DNA repair and recombination proteins [BR:
stre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GZL_05341
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AJC57916
UniProt:
A0A0A8EV66
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All DBs
Position
5747482..5751018
Genome browser
AA seq
1178 aa
AA seq
DB search
MSLSGLLDAVVRDPALAEAVKAAADGHRPHVDLVGPPAARPFAVAALARQAGRPVLAVTA
TGREAEDLAAALRSLVPAGEENSVVEFPSWETLPHERLSPRSDTVGRRLAVLRRLAHPSA
DDPTAGPVSVVVAPIRSVLQPQVKGLGELEPVSLRTGRTADLEEVVDGLAAAAYARVELV
EKRGEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCR
ELLLTDEVRARAAELAEQHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGS
MAVVCDPERVRTRAADLVATSQEFLQASWAASAGGGAAPIDVGAASLWGIADVRDRAREL
GMMWWSVSPFAADEEEADGDTLKLGMHAPETYRGDTQRALADTKEWLADGWRTVFVTEGH
GPAARTVEVLGGEGIAARLEADLGAIAPSVVHVACGSIDNGFVDPGLKIAVLTETDLSGQ
KAAGKDAARMPARRRKQIDPLTLQAGDFIVHEQHGVGRYIEMVQRTVQGATREYLLVEYA
PAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIK
LYSARMAAPGHAFGTDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDV
GYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHYGTFSERYGQFPVNVRALSRFQTDT
EAKAVLEGLRDGAVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVD
VLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEQKQIGAAIRRELLREG
QVFYIHNRVESIDRAAARLREIVPEARIQTAHGQMGESQLEQVVVDFWEKKFDVLVSTTI
VESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERL
ATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASL
EGGVEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANTEEDIAAVREEITDRYG
KLPEPVENLLLVAGLRMLARSCGVSDITLQGSNIRFGPVELRESQELRLKRLHPRTVLKP
ATRQILVPRPTTGRIGGKPLVGRELLAWVGEFLTTILS
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgagtggtctgctcgacgccgtcgtacgggacccggcgctcgccgaagcggtc
aaggccgcggccgacgggcaccggccgcatgtcgatctggtcgggccgccggccgcccgc
ccgttcgcggtggcggcgctggcccggcaggccggccgcccggtgctggcggtgaccgcc
accggccgggaggccgaggacctggccgccgcgctgcggtcgctggtgccggccggcgag
gagaactccgtcgtggagttcccgtcctgggagacgctgccgcacgagcgcctctcgccg
cggtcggacaccgtcggccggcgcctggcggtgctgcgccggctggcccaccccagcgcc
gacgacccgacggccggcccggtgtcggtcgtcgtcgcaccgatccgctccgtgctccag
ccgcaggtcaaggggctgggcgagctggagccggtgagcctgcggacgggccggacagcc
gatctcgaagaggtcgtcgacggcctggcggcggccgcgtacgcgcgcgtcgaactcgtc
gagaagcgcggcgagttcgcggtccgcggcggcatcctggacgtcttcccgcccaccgag
gagcacccgctgcgggtggagttctggggcgacgacgtcgaggagatccggtacttcaag
gtcgccgaccagcgctccctggaggtggccgagcacgggctgtgggcgccgccctgccgc
gagctgctgctcaccgacgaggtgcgggcgcgggccgcggagctcgccgagcagcacccg
gagctgggcgagctgctggggaagatcgccgaggggatcgccgtcgagggcatggagtcc
ctggcgccggtgctggtcgacgacatggagctgctgctggacgtgctgccgaagggcagc
atggcggtggtctgcgacccggagcgggtgcggacccgggcggccgacctggtggcgacg
agccaggagttcctccaggcgtcctgggcggccagcgccggcggcggagcggccccgatc
gacgtgggcgcggcgtccctgtggggtatcgcggacgtccgggaccgggcccgtgagctg
ggcatgatgtggtggtcggtgtcaccgttcgcggccgacgaggaagaggccgacggggac
accctcaagctggggatgcacgccccggagacgtaccgcggggacacccagcgggcgctg
gccgacaccaaggagtggctggcggacggctggcgcacggtgttcgtcaccgagggccat
ggcccggcggcccgcacggtcgaggtgctgggcggcgagggcatcgccgcccgcctggag
gccgacctcggcgcgatcgcgccgtccgtcgtgcatgtggcctgcggctcgatcgacaac
ggcttcgtcgaccccggcctgaagatcgcggtgctgacggagacggacctgtccgggcag
aaggccgcgggcaaggacgcggcccggatgccggcccgccgccgcaagcagatcgacccg
ctgacccttcaggccggcgacttcatcgtccacgaacagcacggtgtgggccggtacatc
gaaatggtgcagcgcacggtccagggcgccacccgcgagtatctgctggtggagtacgcg
ccggccaagcgcggccagcccggcgaccgactgtacatccccaccgaccagctggagcag
gtcaccaagtacgtgggcggcgaggcgccgacgctgcaccggctcggcggcgcggactgg
acgaagaccaaggcgcgcgccaagaaggccgtcaaggagatcgccgccgacctgatcaag
ctgtactcggcccggatggcggcgcccggccacgccttcggcacggacaccccctggcag
cgcgagctggaggacgccttcccgtacgcggagacgcccgaccagctcaccacgatcgcc
gaggtcaaggaggacatggagaagtcggtcccgatggaccggctgatctgcggcgacgtc
ggctacggcaagaccgagatcgcggtccgcgccgccttcaaggccgtccaggacggcaag
caggtggcggtgctggtgccgacgaccctgctcgtccagcagcactacggcaccttcagc
gagcgctacggccaattccccgtcaacgtccgggcgctgtcccggttccagacggacacc
gaggccaaggcggtcctggagggccttcgggacggcgcggtcgacatcgtcatcggcacc
caccgcctgttctcctccgagaccaagttcaaggacctcggcctggtcatcgtcgacgag
gagcagcgcttcggcgtcgagcacaaggagcagctgaagaagctccgcgccaacgtcgac
gtcctgacgatgtccgcgacgccgatcccccggaccctcgaaatggcggtcaccggcatc
cgggagatgtcgacgatcaccacgccgcccgaggagcggcacccggtgctgaccttcgtc
ggcccctacgagcagaagcagatcggcgccgccatccgccgtgaactcctgcgcgagggc
caggtcttctacatccacaaccgggtcgagtccatcgaccgcgcggcggcccggctccgg
gagatcgtgcccgaggcgcgcatccagaccgcccacgggcagatgggcgagtcgcaactg
gagcaggtcgtggtcgacttctgggagaagaagttcgacgtcctggtctccaccacgatc
gtggagtccggcatcgacatctccaacgccaacaccctgatcgtcgagcgcggcgacaac
ttcggcctctcgcagctgcaccagctgcgcggccgcgtcggccgtggccgcgagcgcggc
tacgcctacttcctctacccgccggagaagccgctcaccgagaccgcgcacgaacgcctc
gccaccatcgcccagcacaccgagatgggcgcgggcatgtacgtggccatgaaggacctg
gagatccgcggcgcgggcaacctcctcggcggcgagcagtccggccacatcgccggcgtc
ggcttcgacctgtacgtcaggatggtcggcgaggcggtggccgactaccgggcgtccctg
gagggcggcgtggaggagcccccgctggaggtcaagatcgaactcccggtggacgcgcac
gtcccgcacgactacgcgccgggcgagcggctgcgcctccaggcgtaccgggcgatcgcc
tcggccaacaccgaggaggacatcgccgcggtccgcgaggagatcaccgaccgctacggc
aagctccccgagccggtggagaacctcctcctggtcgccggcctgcggatgctcgcccgc
tcctgcggcgtctccgacatcaccctccagggctccaacatccgcttcggcccggtggag
ttgcgggagtcccaggagctccgcctcaagcggctgcacccgcgcacggtcctcaagccg
gccacccgccagatcctggtaccccgcccgacgaccggccgcatcggcggcaagccgctg
gtggggcgcgagttgctcgcctgggtcggcgagttcctcacgacgatcttgagctga
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