Streptomyces sp. 769: GZL_05811
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Entry
GZL_05811 CDS
T03587
Name
(GenBank) ribonuclease C Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
stre
Streptomyces sp. 769
Pathway
stre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
stre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GZL_05811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
stre03019
]
GZL_05811
03009 Ribosome biogenesis [BR:
stre03009
]
GZL_05811
Enzymes [BR:
stre01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GZL_05811
Messenger RNA biogenesis [BR:
stre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GZL_05811
Ribosome biogenesis [BR:
stre03009
]
Prokaryotic type
rRNA processing factors
GZL_05811
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
HC2
Motif
Other DBs
NCBI-ProteinID:
AJC58386
LinkDB
All DBs
Position
6292159..6295914
Genome browser
AA seq
1251 aa
AA seq
DB search
MLESIEPTESTRSADREGDNNNSPSDTLPPRRRRRAASRPAGPPAAAAAEKAAVVTDAPP
ASSTTPAGAPDTAAAAQPAAEEERPARPRRRATRKATAPAGPAPESVEAPAAAVEEAPAA
AVEEEVRPARARRRATRKATAPAATPEPVVEESPAAEAPAAAVEAPAAAVEEEVRPARAR
RRATRKATAPTATPEPVVEAPATELPAEEEEAEEAPAAAVEEEVRPARARRRATRKATAP
AATPEPVAEAPAAEEAAEAPRRRSRRRAERPAEAAVASAGSTGAADAARAAAPAARTEEE
PSTEAPARGRRRAQRPPTAVFQAPVFAEPMFQTPESAAAEHAAARQEAEPTVETPEEAPA
GAARRRRRRRGEPAEAEPMAAVPAEEPSGASAGPAAAPAAEEVAEVEEAEEAEEHAEAEE
GERPSRRRRRGGRRRRRGDLAEGAEEQPAEGGAAEEPGAEEAEEVAEDEELTAEEQAEGA
ASTSSSRRRRRRRRRSGEPAEGETTHADDPERTVVKVREPRKKDEGTGADEVQSIKGSTR
LEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQSGERTQIGVLEDNVLVEH
FVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALGMANGPRRI
ETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARL
KQILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEEIQKKAKAASTSSPSLLYGE
PDMTVRVVRDIFNEDFSKVIVSGDDAWGTIHGYVSHVAPDLVDRLQRWTSEVDVFATYRI
DEQLMKALDRKVWLPSGGSLVIDKTEAMVVIDVNTGKFTGQGGNLEETVTRNNLEAAEEI
VRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRK
RVGQGLLESFSEQCVHCNGRGVIVHVDQPSAGGKRKKKGKAGANGAQPEQPVEVAAEAAP
AEEAMPELEPVAVTEAQLQPSVDGTDEWFGSAAEAEAAATGRGRGRRRVSRKVSAPAGAP
KAAEEAAAIVLPAAEPEPAPEPVAEAPAAEPAPAVEPAPSRPRRRATRRASAPAGSPEAV
VGEAAGTIVIGAPVAEPTPEAVAEAPEQPVEVAEAAEVAEPAPAAKKTVKKAAAKKTTAK
KAAAKKTTAKKTAAKKTTAKKAAAKKTTTKKTTTKKAAAKKTAASSASAED
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaatctattgagcccaccgaatccacgcggtccgcggaccgtgagggtgacaac
aacaattcgcccagcgacacgctgccgccgcgccgccggcgccgcgcggcctcccggccg
gccggcccgccggccgctgccgccgccgagaaggccgcggtcgtgaccgacgccccgccg
gcgtcgagcacgacccccgccggagcgcccgacaccgccgccgctgcgcagcccgccgcc
gaagaggagcggccggcccgcccgcgccgccgggcgacccgcaaggcgaccgctccggcc
gggcccgcgcccgaatccgtcgaggcgcccgccgctgccgtcgaggaggctccggccgcc
gctgtcgaggaggaggtgcgtccggcgcgtgcgcgtcgtcgtgccacccgtaaggcgacg
gcaccggccgccaccccggagccggtcgtcgaggagagccccgccgcggaggcgcccgcc
gctgccgtcgaggctcccgcggccgctgtcgaggaggaggtgcgtccggcgcgtgcgcgt
cgtcgtgccacccgtaaggcgacggcgccgaccgccaccccggagccggtcgtcgaggcg
ccggccaccgagctgcccgccgaggaagaggaagcggaagaggctccggccgccgctgtc
gaggaggaggtgcgtccggcgcgtgcgcgtcgtcgtgccacccgtaaggcgaccgctccg
gccgccaccccggagccggtggccgaggcgcccgccgccgaggaggccgccgaggccccg
cgccgtcggtcgcgccgccgtgccgagcggcccgcggaggctgccgtcgcaagcgccggc
tccaccggagcggctgacgccgcgcgcgctgctgcgcccgcggcccgtaccgaggaggag
ccctcgaccgaggcgccggcgcgcggtcgccgtcgggcgcagcggccgccgacggccgtc
ttccaggccccggtcttcgccgagccgatgttccagacccccgagagcgccgccgccgag
cacgccgccgcccgccaggaggcggagccgaccgtggagacgcccgaggaggcgccggcg
ggtgccgcgcgtcgccgtcgccgtcgtcgcggcgagcccgccgaggccgagccgatggcc
gccgtgccggccgaggagccgtccggtgcgagcgccggccccgccgcagcgcccgctgcc
gaggaggtcgccgaggtcgaggaggccgaggaggccgaggagcacgccgaggccgaggag
ggcgagcgtccctcgcgccgtcgccgtcgcggcggccgtcgtcgtcgccgcggtgacctg
gccgagggcgcggaggagcagcccgccgagggcggcgcggccgaggagccgggcgccgag
gaggccgaggaggtcgccgaggacgaggagctgaccgccgaggagcaggccgagggcgct
gccagcaccagcagcagccgtcgtcgtcggcgtcgccgccggcgcagcggcgagcccgcc
gagggcgagaccacgcacgccgacgacccggagcgcaccgtcgtcaaggtccgcgagccc
cgcaagaaggacgagggcaccggcgccgacgaggtccagtccatcaagggctcgacgcgc
ctggaggccaagaagcagcgccgccgcgaggggcgcgagcagggccgccgccgggtgccg
atcatcaccgaggcggagttcctggcgcgccgggaggccgtcgagcgggtgatggtggtc
cgccagagcggcgagcgcacccagatcggcgttcttgaggacaacgtgctcgtggagcac
ttcgtcaacaaggagcaggccacctcgtacgtcggcaacgtctacctgggcaaggtccag
aacgtcctgccgtcgatggaggccgccttcgtcgacatcggcaagggccgcaacgccgtg
ctgtacgccggcgaggtcaacttcgaggcgctgggcatggccaacgggccgcgccgcatc
gagaccgcgctgaagtccggccagtccgtcctggtgcaggtcaccaaggacccgatcggt
cacaagggcgcccggctgaccagccaggtctcgctgcccggccgctacctggtctacgtg
cccgagggctcgatgaccggtatcagccgcaagctcccggacaccgagcgggcccggctg
aagcagatcctcaagaagatcgtccccgaggacgcgggcgtcatcgtgcgcaccgcagcg
gagggcgcgagcgaggacgagctgcgccgggacgtcgagcggctgcaggcccagtgggaa
gagatccagaagaaggcgaaggcggcctccaccagctcgccgagcctgctctacggcgag
ccggacatgaccgtccgggtcgtccgcgacatcttcaacgaggacttctccaaggtcatc
gtcagcggtgacgacgcctgggggaccatccacggctatgtctcgcacgtggcgccggat
ctcgtggaccggctccagcggtggacctccgaggtcgacgtcttcgcgacgtaccggatc
gacgagcagctgatgaaggcgctggaccgcaaggtctggctgcccagcggcggttcgctg
gtgatcgacaagaccgaagccatggtcgtgatcgacgtcaacaccgggaagttcaccggg
cagggcggcaacctcgaggagaccgtcacccggaacaacctggaggcggccgaggagatc
gtgcgccagctgcggctgcgcgacctgggcggcatcgtcgtcatcgacttcatcgacatg
gtcctggagtccaaccgggacctggtgctgcggcgcctgctggagtgcctgggccgggac
cgcaccaagcaccaggtggccgaggtcacctcgctgggcctggtccagatgacccgcaag
cgggtcggccagggcctgctggagtccttctccgagcagtgcgtgcactgcaacggccgc
ggcgtgatcgtccacgtcgaccagccgtcggccggtggcaagcgcaagaagaagggcaag
gccggggcgaacggtgcccagccggagcagcccgtcgaggtcgccgcggaggccgccccg
gcggaggaggcgatgccggagctggagccggtcgcggtgaccgaggcgcagctgcagccg
tcggtggacggcaccgacgagtggttcggcagtgccgcggaggccgaggccgccgccacc
gggcggggccgtggccgccgccgggtgagccggaaggtgtcggcgccggcgggtgcgccc
aaggccgccgaggaggccgccgcgatcgtgctgccggccgccgagccggagcccgctccg
gagccggtcgccgaggcgccggcggcggagcccgctcccgccgtggagcccgcgccgtcc
cgtccgcgtcgtcgggccacccgtcgggcgtccgctccggcaggttcgccggaggccgtg
gtgggtgaggccgcggggacgatcgtgatcggcgccccggtcgccgagccgacgcccgag
gcggtcgccgaggcccccgagcagcccgtcgaggtcgctgaggccgccgaggtcgccgag
ccggcgcccgcggcgaagaagaccgtgaagaaggcggcggcgaagaagaccacggccaag
aaggccgcggcgaagaagaccacggccaagaagacggcggcgaagaagaccaccgccaag
aaggccgcggccaagaagaccaccacgaagaagacgacgacgaagaaggcggcggccaag
aagaccgcagcttcgtccgcttccgcggaggactga
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