Streptomyces sp. 4F: ASR50_02240
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Entry
ASR50_02240 CDS
T04265
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
strf
Streptomyces sp. 4F
Pathway
strf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
strf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ASR50_02240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
strf03019
]
ASR50_02240
03400 DNA repair and recombination proteins [BR:
strf03400
]
ASR50_02240
Enzymes [BR:
strf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ASR50_02240
Messenger RNA biogenesis [BR:
strf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ASR50_02240
DNA repair and recombination proteins [BR:
strf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ASR50_02240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF3553
PcrA_UvrD_tudor
AAA_30
Cas3-like_C_2
T4SS-DNA_transf
DUF7529
Motif
Other DBs
NCBI-ProteinID:
ALV48348
LinkDB
All DBs
Position
577447..579114
Genome browser
AA seq
555 aa
AA seq
DB search
MDERERGAELRRVARERFGWSDLGAEQAEAMQELLDGRDVLVVMPTGSGKSAIYQVPTVL
LGGPAVVVSPLIALQRDQVTGLRDSEAPDAVAVNSAQSRSVTDEGWQAVEDGDAEYLFLS
PEQLARKDVLERLRELRPSLFVVDEAHCVSAWGHDFRPDYLTLGDAAERLGRPPVLALTA
TAAAPVREDIVEHLRMRDPRLVTTGTDRPAIRLTVHTYTDDPSKREAVSRWTASAPTPGI
LYTATRKDAEAYAERLREDGVDAEAYHAGLRAAERRRIQDGFMAGAPAVVVATSAFGMGI
DKPDVRFVAHASVPESLDSYYQEVGRAGRDGEAADAVLFYRPEDLGLQKFLTSRSLDTEA
LRRIMDTLLEREVPRSRSRTAELCGLSRRKAGDLLNLLEETGAVVVEGRRRAVRAVSGRS
AEEAAEAAEEVFERRRRIDRSRIEMMRGYAETPSCRRQYLLGYFGEQLDAPCGRCDVCAR
VAGEPGAVDAGRADASPPAGEAGPYEPNERVRHADWGAGTVMHMEEDRVVVLFEQVGYKT
LSLSAVEEGDLLTGA
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggatgagcgggagcggggggccgagttgcgtcgcgtggcgcgtgagcggttcgggtgg
agcgatctgggcgcggagcaggccgaggcgatgcaggagttgctggacggccgtgacgtg
ctggtcgtgatgcccaccggctccgggaagtcggcgatctaccaggtgccgaccgtgctg
ctgggcgggcccgccgtcgtcgtgtcgccgttgatcgcgctgcagcgtgaccaggtcacg
gggctgcgggacagcgaggccccggacgccgtggccgtgaactccgcccagtcgcggtcg
gtgaccgacgagggctggcaggcggtggaggacggtgacgccgagtacctgttcctctcc
ccggagcagcttgccaggaaggacgtcctggagcggctgcgtgagctgcggccgtcgctg
ttcgtcgtcgacgaggcccactgcgtgtccgcctgggggcacgacttccggccggactac
ctcaccctcggcgatgcggccgagcggctgggccgcccgcccgtgctcgcgctcaccgcg
accgcggcggctcccgtccgggaggacatcgtcgagcacctgcgcatgcgtgacccccgc
ctcgtgacgaccggcacggaccggcccgcgatccggctgaccgtgcacacgtacacggac
gacccttccaagcgtgaggccgtctcccgctggacggcctcggcgcccaccccgggcatc
ctctacaccgccacccgcaaggacgccgaggcgtacgcggagcgtctgcgggaggacggg
gtcgacgccgaggcgtaccacgccggactcagggcggcggagcggcggcggatccaggac
gggttcatggcgggcgctcccgccgtggtcgtcgccacctcggcgttcggcatgggcatc
gacaagcccgacgtgcggttcgtcgcgcacgcgtccgtgcccgagtcgctcgactcctac
taccaggaggtcgggcgggccggccgcgacggggaggcggccgacgccgtgctgttctac
cggcccgaggacctggggctgcagaagttcctcacgtccaggtcgctggacaccgaggcg
ctgcggcggatcatggacacgctgctcgagcgggaggtgccgcggagccgcagtcgtacg
gcggagctgtgcgggttgtcgcgccggaaggccggtgacctgctgaacctgctggaggag
accggtgcggtggtcgtcgaggggcggcgccgcgcggtgcgtgccgtgtccgggcggtcg
gcggaggaggcggcggaagcagcggaggaggtgttcgagcggcggcggcgtatcgaccgc
tcgcgcatcgagatgatgcgtggttacgcggagacgccgagctgccgccgccagtacctg
ctcggctacttcggtgaacagctcgatgcgccctgcgggcgttgcgacgtgtgcgcgcgt
gtggccggcgagcccggggcggtggacgcgggacgggcggacgcctctcccccggccggg
gaggcgggaccgtacgagccgaacgagcgtgtgcggcacgcggattggggtgcgggcacc
gtgatgcacatggaggaggaccgtgtcgtcgtgctgttcgagcaggtcggctacaagacg
ctgtcgctgtcggccgtggaggagggtgacctgctgaccggcgcctga
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