Streptomyces sp. 4F: ASR50_12535
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Entry
ASR50_12535 CDS
T04265
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
strf
Streptomyces sp. 4F
Pathway
strf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
strf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ASR50_12535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
strf03019
]
ASR50_12535
03009 Ribosome biogenesis [BR:
strf03009
]
ASR50_12535
Enzymes [BR:
strf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ASR50_12535
Messenger RNA biogenesis [BR:
strf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ASR50_12535
Ribosome biogenesis [BR:
strf03009
]
Prokaryotic type
rRNA processing factors
ASR50_12535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ALV54393
LinkDB
All DBs
Position
complement(2828351..2832547)
Genome browser
AA seq
1398 aa
AA seq
DB search
MPAAEAPAEPAETPQAAEGATDPQQETGAPTPRRRRAVRRAAAPAGAPASAEAAETVVPA
AQPASKAAAPASEPAADTTEDAAPRRARRRATRSVTAPAPAAGTAAADETAAAPETTDTP
AEPAAAATEDAAPRRTRRRATRSVTAPAAETPAEPKAEEPAAEEAEETAPAADTASEPAT
GTEDAAPRRARRRATRTVTAPAPAAGTEAADETAGAPETTDTPAEPAAAATEDAAPRRAR
RRASRRVSAPAGAPASDATAEPVAAQGDDETEQAAPTAEEAPVTENDKQDETPAEAPAVQ
APAEEGGPRRRRRAVRKAAAGFAEPARPARGAEAEDKDDAPRRPARPAVAVFQPPVFAEP
RFQTPERAAAEAAAGLAEAAEPEEETEELPEEQPAASRRRRRRKGASEEPEAAAPAAAEE
APEADAEEEPDQAEDRSDNDEGDDHDDHESSGSRRRRRRGGRRRRRGDSADADSGEQQDG
DTEDAERAGTGQSAQDAEDTDAQSDEDAEERDEREDNGGSSSSRRRRRRRRRAGDSGGEP
EPSADDPERTVVKVREPRPKAEPSDEVQSIKGSTRLEAKKQRRREGREQGRRRVPIITEA
EFLARREAVERVMVVRQHGDRTQIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPS
MEAAFIDIGKGRNAVLYAGEVNFDALGMSGGPRRIESALKSGQPVLVQVTKDPIGHKGAR
LTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTILKKIVPEDAGVIVRTAAEGASE
DELRRDVERLQAQWEEIKKKSKNGGTAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEA
WETIHGYVSHVAPDLAERLQRWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDRTE
AMVVIDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNR
DLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHL
DQPSSSGGGKRRKRARAGAADQPHEHEAAVETPEQEAEAESETPAEVAAEVAEPAALPAP
EFTPDEELYSSAAEAEAAASRGRTRRRASRRASAPAGSPQRESAKGGRKQAEERAEEAPA
AEETQAVPTAQDVTATEEARRPVQPESAAEALAEPAAAEDVVVPQAEEAAPKGRTRRRAT
RKATAPAGSPAGAEAAVVTVAESAKAEPAKAEEAPKAEETPAEAAAPEAAAPEAAAPEAS
APARPRRRAVRKPSTSTASEDTAVVVLPSAPADERKPDEEPAAEPEAVQAAEPVEGAEGA
EEAAPAKKAARKTAKKATAKKAATKKTTTAKKTAAKKTTTAAKKTTAKKSTAKKATTKKT
AAAEQQAPSSVTAAADES
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
ataccggccgccgaggcgcccgccgagccggcggagacgccccaggccgccgagggcgcg
accgacccccagcaggagaccggggcacccacgccccggcgtcgccgtgcggtccgccgc
gcggccgcgcccgccggagcaccggcgtccgccgaggccgccgagaccgtcgtccccgcg
gcgcagcccgcgtccaaggccgccgccccggcatccgagccggccgccgacaccaccgag
gacgccgccccgcgccgcgcccgccgccgtgccacgcgcagcgtgaccgccccggcgccg
gccgccggcaccgcggccgccgacgagaccgccgcggcccctgagaccaccgacaccccg
gccgagccggccgctgccgcgacggaggacgccgctccgcgccgcacccggcgccgtgcc
acgcgcagcgtgaccgcacctgcggccgaaaccccggccgagccgaaggcggaggagccc
gccgcggaagaggcggaagagaccgccccggccgccgacacggcctccgagcccgccacc
ggcaccgaggacgccgccccgcgccgcgcccgccgccgtgccacgcgcaccgtgaccgcc
ccggcgccggccgccggcaccgaggccgccgacgagaccgccggggcccccgagaccacc
gacaccccggccgagccggccgccgccgcgacggaggacgccgccccgcgccgcgcccgc
cgccgtgcctctcggcgcgtgtccgcgcccgccggtgctcccgcctccgacgcgacggcc
gagcccgtcgccgctcagggcgacgacgagaccgagcaggccgccccgaccgccgaggag
gccccggtgacggagaacgacaagcaggacgagacccccgccgaggcgcccgccgtgcag
gcccccgccgaggagggcggcccgcgccgccgtcggcgcgccgtccggaaggccgccgcc
gggttcgccgagcccgcgcgccccgcccgtggcgccgaggccgaggacaaggacgacgcc
ccgcgccgtcccgcgcgtcccgccgtcgccgtgttccagccgccggtgttcgccgagccc
cgcttccagaccccggagcgggccgccgccgaggccgccgcaggactcgccgaggccgcg
gagccggaggaggagaccgaggagctcccggaggagcagcccgccgcctcccgccgtcgc
cgtcgccgcaagggcgcctccgaggagcccgaggccgccgctccggccgccgccgaggag
gctcccgaggccgacgccgaggaagaacccgatcaggccgaggaccggagcgacaacgac
gagggcgacgaccacgacgaccacgagtcgtccggttcgcgccgccgtcgccgtcgtggc
ggccgtcgccgtcgccgtggcgactccgccgacgccgacagcggcgagcagcaggacggc
gacaccgaggacgccgagcgggccggaaccgggcagtccgcgcaggacgccgaggacacc
gacgcgcagagcgacgaggacgccgaggagcgcgacgagcgcgaggacaacggcggctcc
agcagcagccgtcgccgtcgccgccgtcgtcgccgcgccggggacagcggcggtgagccc
gagccgtccgccgacgaccccgagcgcaccgtcgtcaaggtccgcgagccccgcccgaag
gccgagccgtccgacgaggtgcagtccatcaagggctccacccgtctggaggccaagaag
cagcgccgccgcgagggccgcgagcagggccgccggcgcgtgccgatcatcaccgaggcc
gagttcctcgcccgccgcgaggccgtcgagcgcgtcatggtggtccgccagcacggcgac
cgcacgcagatcggcgtcctggaggacggcgtgctcgtcgagcactacgtcaacaaggag
caggccacctcgtacgtcggcaacgtgtacctgggcaaggtgcagaacgtgctgccgtcg
atggaggccgccttcatcgacatcggcaagggccgcaacgccgtgctctacgccggcgag
gtcaacttcgacgcgctcggcatgtccggcggtccgcgccgcatcgagtccgcgctgaag
tccgggcagccggtgctggtccaggtcaccaaggacccgatcggccacaagggcgcccgc
ctcaccagccaggtctccctcccgggccgttacctcgtgtacgtccccgagggctcgatg
accggcatcagccgcaagctgcccgacaccgagcgggcccggctgaagaccatcctcaag
aagatcgtccccgaggacgcgggcgtcatcgtgcgcaccgccgccgagggcgcgagcgag
gacgagctgcgccgtgacgtcgagcgtctccaggcgcagtgggaggagatcaagaagaag
tccaagaacggcggcaccgccccgacgctgctgtacggcgagccggacatgaccgtccgt
gtcgtccgggacatcttcaacgaggacttctccaaggtcatcgtcagcggtgacgaggcc
tgggagaccatccacggctacgtctcccacgtcgcgcccgacctggccgagcgtctgcag
cggtggaccagcgaggtcgacgtcttcgccacgtaccggatcgacgagcagctcgccaag
gcgctggaccgcaaggtctggctgcccagcggcggttcgctggtgatcgaccggaccgag
gcgatggtcgtcatcgacgtcaacaccggcaagttcaccggtcagggcggcaacctcgag
gagacggtcaccaggaacaacctggaggcggccgaggagatcgtgcgtcagctgcggctg
cgcgacctcggcggcatcatcgtcatcgacttcatcgacatggtgctggagtccaaccgg
gacctggtgctgcgccgtctgctggagtgcctgggccgggaccgcaccaagcaccaggtc
gccgaggtgacctcgctgggcctggtgcagatgacccgcaagcgggtcggccagggcctg
ctggagtcgttctccgagacctgcgtccactgcaacggccgcggtgtcatcgtccacctc
gaccagccgtcctcctccggcggtggcaagcgccgcaagcgcgcacgggccggcgcggcg
gaccagccgcacgagcacgaggccgccgtggagacccccgagcaggaggccgaggccgag
tcggagacgccggccgaggtcgccgccgaggtggccgagccggccgcgctgccggcgccc
gagttcacgccggacgaggagctgtacagcagcgccgccgaggcggaggccgccgcgtcc
cggggccgtacgcgccgccgggcgagccgtcgggcctccgcgcccgcgggctccccgcag
cgtgagagcgccaagggcggccgcaagcaggccgaggagcgcgccgaggaggcgcccgcc
gccgaggagacgcaggccgtccccacggcgcaggacgtgacggccaccgaggaggcgcgg
cgtcccgtgcagcccgagtcggccgccgaggcgctggccgagccggccgccgccgaggac
gtcgtggtgccgcaggccgaggaggccgctcccaagggccgtacccgccgccgcgccacc
cgcaaggcgaccgcgccggccggttccccggcgggcgccgaggccgcggtggtgaccgtc
gccgagtccgcgaaggccgagcccgcgaaggcggaggaggcgccgaaggccgaggagacc
ccggccgaggccgccgcccccgaggccgccgcccccgaggccgccgcccccgaggcgtcc
gccccggcccgtccgcggcgtcgcgcggtgcgcaagccgagcacctcgaccgcgtccgag
gacaccgccgtcgtggtcctgccgtccgccccggcggacgagcggaagcccgacgaggag
cccgccgccgagccggaggccgttcaggccgccgagcccgtcgagggcgccgagggcgcc
gaggaggccgctccggccaagaaggccgcccgcaagacggccaagaaggccacggcgaag
aaggccgccacgaagaagacgacgacggccaagaagacggcagccaagaagacgacgacg
gcggcgaagaagaccaccgccaagaagtcgacggcgaagaaggccacgacgaagaagacg
gccgctgccgagcagcaggcgccctcctccgtcacggccgcggccgacgagagctga
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