Streptomyces sp. 4F: ASR50_13230
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Entry
ASR50_13230 CDS
T04265
Name
(GenBank) helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
strf
Streptomyces sp. 4F
Pathway
strf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
strf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ASR50_13230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
strf03400
]
ASR50_13230
Enzymes [BR:
strf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ASR50_13230
DNA repair and recombination proteins [BR:
strf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ASR50_13230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
UvrD_C_2
SH3_13
Viral_helicase1
AAA_11
HHH_5
AAA_22
Helicase_RecD
PIF1
AAA_16
PhoH
NPHP3_N
TraI_hel_assoc_N
nSTAND3
HTH_IclR
DEAD
AAA
ABC_tran
TrwB_AAD_bind
UvrD_C
DUF87
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
ALV50271
LinkDB
All DBs
Position
complement(2992471..2994864)
Genome browser
AA seq
797 aa
AA seq
DB search
MPTQPPPAPPGERRLAVLEGVLERITYANEENGYTVARVDTGRGGNDLLTVVGALLGAQV
GESLRMEGRWGSHPQYGKQFHVENYTTVLPATVQGIRRYLGSGLVKGIGPVFADRITQHF
GTDTLRIIEEEPKRLIEVPGLGPKRTRKIADAWEEQKAIKEVMLFLQTVEVSTSIAVRIY
KKYGDASISVVKNQPYRLAADVWGIGFLTADRIAQSVGIPHDSPDRVKAGLQYALSQATD
QGHCYLPEEKLIADAVKLLQVDTGLVIECLAELAAEPEDPGEDPGVVREKVPDPDGGDPV
TAVYLVPFHRAEVALASQLTRLLRTDQDRMPAFHDVVWDKALGWLRGRTGTDLAPEQEAA
VKLALTQKVAVLTGGPGCGKSFTVRSIVELARAKRAKVVLAAPTGRAAKRLAELTGAEAS
TVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVD
QLPSVGAGEVLRDLLADGSPVPAVRLTRVFRQAQQSGVVTNAHRINAGKHPVTEGMKDFF
LFVEDDTEEAGRLTVDVAARRIPAKFGLDPRRDVQVLAPMHRGPAGAGTLNGLLQQAVTP
ARPDRPEKRFGGRVFRVGDKVTQIRNNYEKGANGVFNGTVGVVTSLDPVDQRLTVLTDED
EEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRARKLV
VLVGSRKAIGQAVRTLSAGRRCTALDMRLAGGGAAGAGPRSAGSGSARGGPGGDRLSAGA
DAAVRAPSSKNDRSNES
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgcccacccagccaccacccgcaccccccggcgaacgccggctcgccgtgctcgaaggc
gtgttggagcgcatcacctacgccaacgaggagaacggctacaccgtcgcccgcgtcgac
accggccgcggcgggaacgacctgctcaccgtcgtcggcgcgctgctcggcgcgcaggtg
ggggagtcgctgcggatggagggacgctgggggtcgcacccccagtacggcaagcagttc
cacgtcgagaactacacgaccgtcctgcccgccaccgtgcagggcatccgccgctacctc
ggctcggggctggtgaagggcatcgggcccgtcttcgccgaccggatcacccagcacttc
ggcacggacaccctccggatcatcgaggaggagccgaagcggctcatcgaggtcccgggg
ctcggccccaagcggaccaggaagatcgcggacgcctgggaggagcagaaggcgatcaag
gaggtcatgctcttcctccagaccgtcgaggtctccacctccatcgccgtgcgcatctac
aagaagtacggcgacgcctccatctccgtggtgaagaaccagccctaccggctcgccgcc
gacgtctggggcatcggcttcctcaccgccgacaggatcgcccagtcggtcggcatcccc
cacgacagcccggaccgcgtgaaggcgggcctccagtacgcgctgtcgcaggccaccgac
caaggccactgctacctccccgaggagaagctcatcgccgacgcggtgaagctgctccag
gtggacaccggcctggtcatcgagtgcctcgccgaactggccgccgagccggaggacccg
ggggaggaccccggtgtcgtccgcgagaaggtgcccgacccggacggcggcgaccccgtc
accgccgtctacctggtgccgttccaccgcgccgaagtcgccctcgcctcccagctgacg
cggctgctgcgcaccgaccaggaccggatgcccgcgttccatgacgtggtgtgggacaag
gcgctcggctggctgcgcgggcgtacggggacggacctggcgcccgaacaggaggcggcg
gtcaagctggcgttgacgcagaaggtcgccgtgctgaccggcgggccgggctgcgggaag
tccttcaccgtcaggtcgatcgtcgagctggcccgcgccaagagggcgaaggtggtgctc
gccgcgccgaccggccgcgccgccaagcggctcgccgagctgaccggcgccgaggcgtcc
accgtgcaccggctgctggagctgaaacccggcggggacgcggcgtacgaccgggaccgg
ccgctggacgccgacctggtcgtggtcgacgaggcgtccatgctggacctgctgctggcg
aacaagctggtcaaggccgtgccgccgggcgcccacctgctgttcgtcggggacgtcgac
cagctgcccagcgtcggcgcgggcgaggtgctccgggacctgctcgccgacggcagcccc
gtccccgccgtccgcctcacccgcgtcttccgccaggcccagcagtccggcgtggtcacc
aacgcccaccggatcaacgccggcaagcaccccgtcaccgagggcatgaaggacttcttc
ctcttcgtcgaggacgacaccgaggaggccgggcggctcaccgtcgacgtcgcggcccgg
cgtatccccgccaagttcggcctcgacccgcgccgggacgtgcaggtcctcgcccccatg
caccgcggcccggcgggcgccggcaccctcaacgggctgctgcagcaggccgtcaccccc
gcccgccccgaccggcccgagaagcggttcggcggccgggtgttccgcgtcggcgacaag
gtcacccagatccgcaacaactacgagaagggcgccaacggcgtcttcaacggcaccgtc
ggcgtcgtcacctcgctcgaccccgtcgaccagcgcctgaccgtgctgaccgacgaggac
gaggaggtgccgtacgacttcgacgagctggacgagctggcgcacgcctacgccgtgacc
atccaccgttcccagggcagcgagtacccggcggtcgtcatccccgtcaccacgggcgcg
tggatgatgctccagcgcaacctgctctacacggcggtcacccgggcccggaagctggtc
gtcctggtcggctcccgcaaggccatcggccaggcggtgcgcacgctgtcggccggacgc
cggtgcacggccctcgacatgcggctcgcgggtgggggagcggccggggcgggaccccgt
tccgccggttccggatcggcacgcgggggacccggaggggaccgcctctcggcgggggcg
gatgccgctgtgagggccccgtcatcaaaaaatgatcgatcaaatgagtcgtga
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