Streptomyces sp. 4F: ASR50_19725
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Entry
ASR50_19725 CDS
T04265
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
strf
Streptomyces sp. 4F
Pathway
strf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
strf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ASR50_19725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
strf03400
]
ASR50_19725
Enzymes [BR:
strf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ASR50_19725
DNA repair and recombination proteins [BR:
strf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ASR50_19725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ALV51414
LinkDB
All DBs
Position
4401950..4405483
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVVKDTALAEAVTAAADGNRMHVDLVGPPAARPFAVAALARDAGRPVLAVTA
TGREAEDLAAALRSLLPPQGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVSLRTGQSADLNDVVDALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDIEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDEVRERARVLAEEHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMTV
VCDPERVRTRASDLVATSQEFLQASWAATAGGGEAPIDVGAASLWSLADVRDRARELDMP
WWTVSPFAADEELDADTLKLGLHAPESYRGDTARALADTKGWIADGWRTAYVTEGHGPAA
RTVEVLGGEGIAARLDNDLGELTPSVVHVSCGCIDHGFVAPALKLAVLTETDLTGQKASG
REGARMPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGQDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVNVRALSRFQTDTEAKA
VLEGLKDGSVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYDQRQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLETGE
VEEEAPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEEDIAAVREELVDRYGKL
PEPVENLLLVAGLRMLARACAVGEIVLQGTNIRFAPVELRESQELRLKRLYPGSVIKPTS
HQVLVPRPKTAKVGGKPLVGRDLLGWVGEFLTSVLGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaaggacaccgccctcgcggaagcggtc
acggccgccgccgacggcaaccgcatgcacgtcgacctggtcggcccgcccgcggcccgt
ccgttcgcggtcgccgccctggcccgtgacgccggccgccccgtgctcgccgtgacggcc
acgggacgcgaggcggaggacctggcggccgccctgcgctcgctgctcccgccccagggc
gtcgtggagtacccgtcctgggagacgctgccgcacgagcggctcagcccccgcagcgac
accgtcggccgccgcctcgccgtgctgcggcgcctggcccacccccgccccgacgacccc
gagaccggccccgtctccgtcgtcgtcgcccccgtgcgctccgtgctccagccgcaggtc
aagggcctcggcgacctggagcccgtctccttgcgcaccgggcagagcgccgacctgaac
gacgtcgtcgacgccctcgccgccgccgcgtacgcgcgcgtggagctggtggagaagcgc
ggcgagttcgcggtgcgcggcggcatcctcgacgtgttcccgcccaccgaggagcacccc
ctgcgggtggagttctggggcgacgacatcgaggagatccgctacttcaaggtcgccgac
cagcggtccctggaggtcgccgagcacggactgtgggcgccgccctgccgtgagctgctg
ctcaccgacgaggtgcgcgagcgggcgcgggtgctcgccgaggagcacccggagctgggc
gagctgctcgggaagatcgccgagggcatcgcggtggagggcatggagtccctcgccccg
gtcctcgtcgacgacatggagctgctgctggacgtgctgcccaagggcgccatgaccgtc
gtctgcgacccggagcgggtgcgcacgcgcgcctccgacctggtcgccacctcgcaggag
ttcctgcaggcgtcctgggcggccaccgccggcgggggcgaggcgcccatcgacgtcggc
gccgcctccctgtggtccctcgccgacgtccgggaccgggcccgcgagctggacatgccg
tggtggacggtgtcgccgttcgccgccgacgaggaactcgacgccgacacgctcaagctg
ggcctgcacgcccccgagagctaccgcggcgacaccgcgcgggcgctcgccgacaccaag
ggctggatcgccgacggctggcgcaccgcctacgtcaccgagggccacggcccggccgcc
cgcaccgtggaggtgctcggcggggagggcatcgccgcccgcctcgacaacgacctgggc
gagctgaccccgtccgtcgtgcacgtgtcctgcggctgcatcgaccacggcttcgtcgcc
ccggcgctcaagctggccgtgctcaccgagaccgacctcaccggccagaaggcgtccggc
cgcgagggcgcccggatgcccgcccggcgccgcaagaccatcgacccgctcacgctggag
gcgggcgactacatcgtccacgagcagcacggcgtcggccggtacatcgagatggtgcag
cgcaccgtgcagggcgccacccgcgagtacctggtcgtggagtacgccccggccaagcgc
ggccagcccggcgaccgtctgtacatccccaccgaccagctcgagcagatcaccaagtac
gtcggcggcgaggcgcccaccctgcaccggctcggcggtgccgactggaccaagaccaag
gcgcgcgccaagaaggccgtcaaggagatcgccgccgacctgatcaagctgtacagcgcg
cggatggcggcgccgggccacgccttcgggcaggacaccccctggcagcgcgagctggag
gacgccttcccctacgcggagacgcccgaccagctcaccaccatcgccgaggtcaaggag
gacatggagaagtcggtccccatggaccggctgatctgcggcgacgtcggttacggcaag
accgagatcgcggtgcgggccgcgttcaaggccgtgcaggacggcaagcaggtcgcggtg
ctggtgccgacgacgctgctggtgcagcagcacttcgggacgttcagcgagcggtacgca
cagttcccggtgaacgtgcgggcgctgtcgcgcttccagaccgacaccgaggcgaaggcg
gtcctggagggtctgaaggacggctcggtggacgtggtgatcggcacccaccggctgttc
tcctccgagaccaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcggttc
ggcgtcgagcacaaggagcagctgaagaagctccgcgccaacgtcgacgtgctcaccatg
tccgccacgcccatcccgcggaccctggagatggcggtcaccggcatccgcgagatgtcg
acgatcaccaccccgcccgaggagcgccacccggtgctcaccttcgtcggcccctacgac
cagcggcagatcggcgccgccatccgccgtgaactgctgcgcgagggccaggtcttctac
atccacaaccgcgtcgagtccatcgaccgggcggcggcccggctccgcgagatcgtgccc
gaggcgcgcatcgcgaccgcccacggccagatgtcggagcaggcgctggagcaggtcgtc
gtcgacttctgggagaagaagttcgacgtgctggtgtcgacgacgatcgtcgagtccggc
atcgacatctccaacgccaacaccctgatcgtcgagcgcggcgacaacttcggcctctcc
cagctgcaccagctgcgcggccgcgtcggccgcggccgcgagcgcgggtacgcgtacttc
ctctacccgccggagaagccgctgacggagaccgcgcacgaacgtctcgcgaccatcgcg
cagcacaccgagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgcggc
gcgggcaacctgctcggcggcgagcagtccgggcacatcgcgggcgtcggcttcgacctg
tacgtgcggatggtcggcgaggccgtcgccgactaccgccgccagctggagaccggcgag
gtggaggaggaggcgccgctcgaggtgaagatcgagctgccggtcgacgcgcacgtcccg
cacgactacgcgcccggcgagcggctgcgcctccaggcctaccgggccatcgcctccgcg
aacagcgaggaggacatcgcggccgtccgcgaggaactggtcgaccgctacggcaagctg
ccggagccggtggagaacctgctgctggtggcgggcctgcggatgctcgcgcgggcgtgc
gcggtcggcgagatcgtgctgcagggcacgaacatccggttcgcgccggtggagctgcgc
gagtcgcaggagctgcggctcaaacgtctctaccccggctcggtgatcaagccgacgtcc
caccaggtgctggtgccgcgcccgaagaccgcgaaggtcggcggcaagccgctggtcggg
cgggacctgctcggctgggtgggggagttcctcacctcggtcctggggtcctga
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