Streptomyces sp. 4F: ASR50_20445
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Entry
ASR50_20445 CDS
T04265
Name
(GenBank) Fis family transcriptional regulator
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
strf
Streptomyces sp. 4F
Brite
KEGG Orthology (KO) [BR:
strf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
strf03016
]
ASR50_20445
Enzymes [BR:
strf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ASR50_20445
Transfer RNA biogenesis [BR:
strf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ASR50_20445
Prokaryotic type
tRNA splicing ligases
ASR50_20445
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ALV51542
LinkDB
All DBs
Position
4570575..4571768
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AA seq
397 aa
AA seq
DB search
MSYVELPGAKVPIRMWTDPATVEEGALQQLRNVATLPWIEGLAVMPDVHYGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEQAIPVGRGMHDDPVDPG
RLHGFATGGWDDFWTRFGGVADAVKFREERAAKQMGTLGSGNHFVEVCTDTEGSVWLMLH
SGSRNIGKELAEHHIGIAQKLPHNQNLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKYNR
TIMMALLKDVVRKEFKKAKPTFEQEISAHHNYVAEERYEGVDLLVTRKGAIRAGSGEYGI
IPGSMGTGSYIVKGLGNAASFNSASHGAGRRMSRNAAKRRFTAKDLAEQTQGVECRKDSG
VVDEIPSAYKPIEQVIDQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgtacgtggaactgccgggcgcgaaggtgccgatccgcatgtggacggacccggcg
acggtggaggagggcgcgctccagcagctgcgcaacgtcgccaccctgccgtggatcgag
ggcctggccgtcatgccggacgtccactacggcaagggcgcgacggtcggttcggtcatc
gcgatgcggggcgcggtgtgcccggcggcggtgggcgtggacatcggctgcggcatgtcc
gcggtgaagacgtccctgacggcgaacgacctgcccggcgacctgtcccggctgcgctcg
aagatcgagcaggcgattccggtgggccgcggcatgcacgacgacccggtggaccccggc
cggctgcacggcttcgcgacgggcggctgggacgacttctggacccgcttcggcggggtc
gcggacgcggtgaagttccgcgaggagcgggcggcgaagcagatggggacgctcgggtcc
gggaatcacttcgtcgaggtgtgcaccgataccgagggttccgtctggctgatgctgcac
tccggttcccgcaacatcggcaaggaactggccgagcaccacatcggcatcgcgcagaag
cttccgcacaaccagaacctggtcgaccgggacctcgccgtcttcgtcgcggacaccccg
cagatggcggcgtaccgcaacgacctgttctgggcgcaggagtacgcgaagtacaaccgc
acgatcatgatggcgctcctcaaggacgtggtccgcaaggagttcaagaaggcgaagccc
accttcgagcaggagatcagcgcgcaccacaactacgtggccgaggagcgctacgagggc
gtggacctgctcgtcacccgcaagggcgcgatccgcgcggggtccggcgagtacgggatc
atcccgggctcgatgggcaccggttcgtacatcgtgaaggggctggggaacgcggcgtcc
ttcaactccgcgtcgcacggcgccggccggcggatgagccggaacgcggccaagcggcgc
ttcacggcgaaggacctggccgagcagacccagggcgtggagtgccgcaaggactccggc
gtcgtggacgagatcccgagcgcctacaagccgatcgagcaggtcatcgaccagcagcgg
gacctcgtcgaggtcgtggcgaagctgaagcaggtcgtctgcgtcaagggctga
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