Streptomyces sp. 4F: ASR50_25940
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Entry
ASR50_25940 CDS
T04265
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
strf
Streptomyces sp. 4F
Pathway
strf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
strf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ASR50_25940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
strf03019
]
ASR50_25940
03016 Transfer RNA biogenesis [BR:
strf03016
]
ASR50_25940
Enzymes [BR:
strf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
ASR50_25940
Messenger RNA biogenesis [BR:
strf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ASR50_25940
Transfer RNA biogenesis [BR:
strf03016
]
Prokaryotic type
tRNA degradation factors
ASR50_25940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_2
KH_PNO1_2nd
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
ALV52517
LinkDB
All DBs
Position
5774714..5776927
Genome browser
AA seq
737 aa
AA seq
DB search
MENETHYAEAVIDNGSFGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATSASKNPKDQ
LDFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDAVLTCRLIDRPLRPSFKKGLRNEIQV
VATIMALNPDHLYDVVAINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFPTHTELEDA
VFDMVVAGRVLEDGDVAIMMVEAEATEKTIKLVEGGAEAPTEEVVAAGLDAAKPFIKVLC
KAQADLAAKAAKPTGEFPIFLDFQDDVLEALTAAVKPELAQALTIAGKQEREAELDRVKG
LAAEKLLPEFEGREKEISAAYRALTKSLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPR
VHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSP
KRREIGHGALAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVP
LKAPVAGIAMGLISQEINGETHYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLD
GIPASVLAAALKQARDARLHILDVMMEAIDTPDEMSPNAPRIITVKIPVDKIGEVIGPKG
KMINQIQEDTGAEITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVK
TTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGHKVQVEIAEIDSRGKLSL
IPVIEGEDDDKKDDADK
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
gtggagaacgagacccactacgccgaggccgtcatcgacaacggctccttcggcacccgc
accatccgcttcgagacgggccgcctggcccgtcaggccgccggctccgccgtggcctac
ctggacgacgacaccatggtgctgtcggccaccagcgcttccaagaaccccaaggaccag
ctcgacttcttccccctcacggtggacgtcgaggagcggatgtacgcggccgggaagatc
cccggctcgttcttccgccgtgagggccgtccctccgaggacgccgtcctcacctgccgt
ctgatcgaccgcccgctgcgcccgtccttcaagaagggcctgcgcaacgagatccaggtc
gtcgccacgatcatggcgctcaaccccgaccacctgtacgacgtcgtggcgatcaacgcc
gcgtccgcgtcgacgcagctggccggcctgcccttctccggtccgatcggcggcgtccgc
gtcgcgctgatccgcggccagtgggtcgccttcccgacgcacaccgagctcgaggacgcc
gtcttcgacatggtcgtcgcgggccgcgtcctcgaggacggcgacgtcgcgatcatgatg
gtcgaggccgaggccaccgagaagacgatcaagctcgtcgagggcggcgccgaggcgccg
accgaggaggtcgtcgccgccggtctggacgccgcgaagcccttcatcaaggtgctctgc
aaggcccaggccgacctcgccgcgaaggccgccaagccgaccggcgagttcccgatcttc
ctcgacttccaggacgacgtcctggaggcgctcaccgcggccgtcaagcccgagctcgcc
caggcgctcaccatcgccggcaagcaggagcgcgaggccgagctggaccgcgtcaagggt
ctcgccgccgagaagctcctgccggagttcgagggccgcgagaaggagatctccgccgcg
taccgcgcgctgaccaagtccctggtccgcgagcgcgtcatcaaggagaagaagcgcatc
gacggccgcggtgtcaccgacatccgcaccctggccgccgaggtcgaggccatcccgcgc
gtgcacggctcggcgctgttcgagcgcggtgagacccagatcctgggcgtcaccacgctg
aacatgctgcgcatggagcagcagctggacaccctctccccggtgacccgcaagcgctac
atgcacaactacaacttcccgccctactccgtcggcgagaccggccgcgtcggctccccg
aagcgccgcgagatcggccacggcgccctcgccgagcgcgccatcgtgccggtgctgccg
acgcgcgaggagttcccctacgcgatccgtcaggtgtccgaggccctcggctccaacggc
tcgacgtccatgggctcggtctgcgcctccaccatgtcgctgctgaacgccggtgtgccg
ctgaaggcccccgtcgccggtatcgccatgggcctgatctcccaggagatcaacggcgag
acgcactacgtcgccctcaccgacatcctcggtgcggaggacgccttcggtgacatggac
ttcaaggtcgccggcaccaaggacttcgtgaccgccctccagctcgacaccaagctggac
ggcatccccgcctccgtcctggccgccgcgctcaagcaggcccgtgacgcccgcctccac
atcctcgacgtgatgatggaagcgatcgacacgccggacgagatgtcccccaacgcgccg
cggatcatcaccgtgaagatcccggtcgacaagatcggcgaggtcatcggccccaagggc
aagatgatcaaccagatccaggaggacaccggcgccgagatcacgatcgaggacgacggc
acgatctacatcggcgccgccgacggtccggccgccgaggccgcccgcgccacgatcaac
ggcatcgccaacccgacgatgcccgaggtcggcgagcgctacctgggcacggtcgtcaag
accacgaccttcggcgcgttcgtctccctgctccccggcaaggacggtctgctgcacatc
tcgcagatccgcaagctggccggcggcaagcgcgtggagaacgtcgaggacgtcctcggc
gtgggccacaaggtccaggtcgagatcgccgagatcgactcccgcggcaagctctccctg
atccccgtgatcgagggcgaggacgacgacaagaaggacgacgccgacaagtga
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