Streptomyces sp. 4F: ASR50_27405
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Entry
ASR50_27405 CDS
T04265
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
strf
Streptomyces sp. 4F
Brite
KEGG Orthology (KO) [BR:
strf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
strf03016
]
ASR50_27405
Enzymes [BR:
strf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
ASR50_27405
Transfer RNA biogenesis [BR:
strf03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
ASR50_27405
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
ALV52778
LinkDB
All DBs
Position
complement(6188152..6189432)
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AA seq
426 aa
AA seq
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MTDAHDTAADSSLRTTGGAPPDDGGSSAEQAPIPLLEPRDGIPPVVADEAALAEVVAAFA
AGRGPVAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVACPDLSALDEALSGVEWVLH
AATQDLPCLREIGMAPTRLFDTELAGRLAGFPRVGLGAMVENVLGFLLEKGHSAVDWSTR
PLPEPWLRYAALDVELLVDLRDALEKELDRQGKLDWARQEFDAIASAPPPEPRKDPWRRT
SGMHKVRRRRQMAVVRELWQTRDRIARRRDVSPGKVLSDAAIVEAALAMPSNPHALAALN
GFGQRVGRRQLEQWQAAVDRAKALSEDRLPQPGQPVTGPPPPRAWADKDPAAAARLSAAR
AGVTALAERLNMPAENLITPDTVRRVCWEPPAPATPETVAAALTSHGARAWQVEQVTPVL
VSALTG
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacgcccacgacaccgcagcagacagttcactgcgcaccaccggaggcgcccct
ccggacgacggcggatcctctgctgaacaggcgccgatccccctgctggagccccgcgac
ggcatcccgcccgtggtggccgacgaagccgccctcgccgaggtggtcgccgccttcgcc
gcgggccgcggacccgtcgccgtggacgccgagcgcgcctccggctaccgctacggacag
cgcgcctacctcgtgcagctccggcgcgagggcgcgggcacggcgctgatcgacccggtc
gcatgccccgatctgtccgccctggacgaggcgctgtccggtgtggagtgggtgctgcac
gccgccacccaggacctgccctgcctgcgcgagataggcatggcgccgacgcggctcttc
gacaccgagctggcgggccgcctggccgggttcccccgggtcggcctcggcgcgatggtg
gagaacgtgctcggcttcctgctggagaagggccactccgccgtcgactggtccacgcgc
ccgctgcccgagccgtggctgcggtacgccgccctcgacgtcgagctgctggtggacctg
cgggacgcgctggagaaggagctggaccggcagggcaagctggactgggcgcggcaggag
ttcgacgcgatcgcctcggcgccgccgcccgagccccgcaaggacccctggcgccgcacg
tcgggcatgcacaaggtccgccgccgccggcagatggccgtcgtacgggagctgtggcag
acccgggaccggatcgcccggcgccgtgacgtctcccccggcaaggtgctgtccgacgcg
gcgatcgtcgaggccgccctcgccatgccgtccaacccgcacgccctggccgcgctgaac
ggcttcggccagcgggtgggccgccgccagctcgagcagtggcaggcggccgtcgaccgg
gcgaaggcgctgagcgaggaccggctgccccagccgggccagccggtgaccggtcccccg
ccgccgcgcgcctgggccgacaaggacccggcggccgcggcccggctgtcggccgcgcgg
gccggcgtgaccgcactcgccgagcggctgaacatgcccgcggagaacctgatcacgccg
gacaccgtgcgccgggtctgctgggagccgcccgcccctgccacccccgagacggtcgcc
gcggccctgacgtcccacggcgcccgcgcctggcaggtggaacaggtgaccccggtcctg
gtgtcggccctgacgggctga
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