Streptomyces sp. 4F: ASR50_31830
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Entry
ASR50_31830 CDS
T04265
Name
(GenBank) DNA lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
strf
Streptomyces sp. 4F
Pathway
strf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
strf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ASR50_31830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
strf03400
]
ASR50_31830
Enzymes [BR:
strf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
ASR50_31830
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
ASR50_31830
DNA repair and recombination proteins [BR:
strf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
ASR50_31830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
Ribosomal_S13
NFACT_N
Zn_ribbon_RRN7
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
ALV53553
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All DBs
Position
7213012..7213875
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AA seq
287 aa
AA seq
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MPELPEVEALKDFLTEHLTGHEIVRALPVAISVLKTYDPPLTAVEGREVTAVRRYGKFLA
LATDGGPHLVTHLARAGWLHWKDPLPSGVPRPGKGPLALRVALETGAGFDLTEAGTQKRL
AVYVVADPAEVPGIARLGPDPLADDFDKARLGELLSGERRRLKGALRDQSLIAGVGNAYS
DEILHAARMSPFKLASSLTPEETARLHEALRTTLTDAVERSRGLAAGRLKAEKKTGLRVH
GRTGEPCPVCGDTVREVSFSDSSLQYCPTCQTGGKPLADRRLSRLLK
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgccggaactccccgaggtcgaggcgctcaaggacttcctcaccgagcacctgaccggc
cacgagatcgtgcgggcgctgcccgtggcgatcagcgtcctgaagacctacgacccgccg
ctcaccgccgtcgagggccgcgaggtcactgccgtgcggcggtacggcaagttcctcgcg
ctggccacggacggcggcccgcacctcgtcacccatctggcgcgcgcgggctggctgcac
tggaaggacccgctgcccagcggcgtgccccgtcccggaaagggcccgctggcgctgcgg
gtcgccctggagaccggggccggcttcgacctgacggaggccggaacccagaagcggctg
gccgtgtacgtggtggccgacccggcggaggtcccggggatcgcgcggctcggaccggac
ccgctggccgacgacttcgacaaggcgcgcctgggggagctgctctccggggaacgccgc
cggctcaagggcgccctgcgcgaccagagcctgatcgccggcgtcggcaacgcctacagc
gacgagatcctgcacgcggcccgcatgtccccgttcaaactggcctcctcgctcaccccg
gaggagacggcccggctccacgaggcgctgcgcaccaccctcaccgacgcggtggaacgc
tcgcggggactggcggccgggcggctgaaggcggagaagaagaccggcctgcgcgtgcac
ggccgcaccggcgagccctgcccggtgtgcggggacaccgtccgcgaggtgtcgttcagc
gactcctcgctccagtactgccccacctgccagacgggcggcaagccgctcgcggaccgg
agactgtcccgcctgctgaagtga
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