Streptococcus troglodytae: SRT_05200
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Entry
SRT_05200 CDS
T06912
Symbol
vacB
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
strg
Streptococcus troglodytae
Pathway
strg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
strg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SRT_05200 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
strg03019
]
SRT_05200 (vacB)
03016 Transfer RNA biogenesis [BR:
strg03016
]
SRT_05200 (vacB)
Enzymes [BR:
strg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SRT_05200 (vacB)
Messenger RNA biogenesis [BR:
strg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SRT_05200 (vacB)
Transfer RNA biogenesis [BR:
strg03016
]
Prokaryotic type
tRNA degradation factors
SRT_05200 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
RNase_II_C_S1
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
BAQ23781
UniProt:
A0A1L7LHW4
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All DBs
Position
510437..512773
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AA seq
778 aa
AA seq
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MKEKIITYLEEKGKSSVDDLASSLNMAGAQKFPSLIKEISKLESKGKLRFEQDGTISLRK
TKEKKDQVTVTGIFRANKAGFGFVSIDEAEEDLFIGRNDVGHAVDGDTVEVAIKKIADRL
KGTAAEARVVKIVEHSLKTVVGRFVLDDEKPPYIGYIKSKNQKITQKIYIKKEPIVLDGT
EIIKVAIEKYPTRRYDYFVASVEDVIGHQDDVGIDVLEVLESMDIVSEFPDAVLKEAQSV
PDAPSEKDLIGRVDLRKEVTFTIDGADAKDLDDAVHVKLLDNGNFELGVHIADVSYYVKE
GSALDGEALARGTSVYVTDRVVPMLPERLSNGICSLNPNLDRLTQSAIMEIDKDGHVLHY
QITQTVINTSFRMTYSDVNAIIAGDKELTERYDKIVPSIHYMVTLHKILEKMRERRGALN
FDTSEAKILVNDKGFPMDIVLRQRGLAERMIESFMLAANECVAEHFAKKNLPFIYRIHEE
PKAEKLQKFMDYASIFGVSIQGTASKISQTALQDFMKKIEGRPGSDVLSMMLLRSMQQAR
YAEHNHGHYGLAAQYYTHFTSPIRRYPDLLVHRLVREYDKANSEKVEHFAQIIPEIASQT
SSLERRAIDAERVVEAMKKAEYMEEYVGQEFTGVVSSVVKFGLFVELSNTIEGLIHMTTL
PEFYQFNERTLSLHGEKSGKVFRVGQSIKVKVLKADKETGDIDFAYLPSDFDVIEKFSHS
KKNKPRPSRRGGDSKTKADKRSKQSTLSQKKKKKPFYKEAVKKGGKHGKGSRKRRRSK
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaaaattattacttatttagaagagaaggggaaatcaagtgttgatgattta
gccagcagtttaaatatggctggtgctcaaaaatttccttctcttatcaaagagatttcc
aagctcgaaagtaaaggtaaattgcgctttgagcaagatggcacaatctcacttagaaag
acgaaagaaaagaaagaccaagttactgtcacaggcatttttcgtgctaataaggcgggt
tttggatttgtcagtatcgacgaagcagaagaagatctttttatcggccgtaatgatgtt
ggtcatgcagttgatggtgatacggtagaggtagcgattaaaaaaattgctgatcgcctt
aaaggaacggcagcagaggcgcgtgttgttaagattgttgagcacagtttaaaaacagtt
gtcggccgttttgttttggatgatgaaaagcctccctatattggctatattaagagtaaa
aatcaaaaaattacacaaaagatttatatcaaaaaagaacccattgttttagatgggact
gagattattaaggtagcaattgaaaagtatccaacgcggcgttatgattattttgtggct
agtgttgaggatgtgattggtcatcaggacgatgtcggaatagatgttttggaagttttg
gaatccatggacatcgtgtctgaatttcctgacgctgttttaaaagaagcccagtctgtt
ccggatgctcctagtgagaaagatttgatcggtcgagtagatttacgcaaagaggttact
tttaccattgatggggcggatgctaaagatttggatgatgcggttcatgtcaaattatta
gataatggcaattttgagctcggtgttcatattgccgatgtttcttattatgtcaaggaa
ggctcagctttggatggtgaagccttagctagaggaaccagtgtttatgtgactgaccgt
gtggttcctatgctacctgaacgtttgtctaatggcatttgttccctcaatcctaatctt
gaccgtctgacgcagtctgctattatggaaatagataaggacggtcatgtgctccattat
cagattactcaaactgttatcaatactagttttcgtatgacttacagtgatgtcaatgct
attattgcaggggacaaagaactgacagagcgatacgacaagattgtgccatctattcac
tatatggtgaccttgcataagattttagaaaagatgcgtgagagacgcggagcccttaat
tttgatacctcagaagccaaaattttggttaatgataaaggctttcctatggacattgtg
ctgcgtcagcgtggtttagctgagcgaatgattgagtctttcatgctggcagccaatgaa
tgtgtggctgagcattttgctaagaaaaatcttccttttatctaccgaatccatgaagaa
cctaaggctgaaaagttacagaaatttatggactatgcgagcatttttggtgtcagtatt
cagggaacagccagtaaaatcagccagacagctctgcaagattttatgaaaaaaatcgag
gggcgaccgggcagtgatgttctttccatgatgttactgcgttctatgcagcaggcgcgt
tatgctgagcataatcatggccattatggtttggcagcgcaatactatacgcattttacc
agtccaattcgccgttatccagaccttttggtgcatcgcttggtgcgtgaatacgataaa
gcgaattctgagaaagtggagcattttgcacaaattatccctgaaattgccagtcaaacc
agcagtttggaacgtcgtgccattgatgctgagcgtgttgttgaggccatgaaaaaagca
gaatatatggaagaatatgtagggcaagaattcactggtgtcgtctccagtgttgtcaaa
ttcggtctttttgtagaactgtctaataccattgaaggtctcattcatatgacgacccta
ccagaattttatcagtttaatgaacgcactttaagtttgcacggtgagaaatctggtaag
gttttccgagttggtcaatccatcaaagtaaaagtgcttaaagcagataaggaaacaggt
gatattgattttgcctatcttccaagtgattttgatgtcattgaaaaattctctcattcc
aaaaagaataagccgcgtccttcacgtcgcggtggcgacagcaaaacgaaggctgataag
cgtagcaaacaatcaactctttcacaaaagaagaaaaagaagcctttttataaggaggca
gtaaagaaaggaggcaagcatggtaaaggctcaaggaaacgtcgtcgctcaaaataa
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