Streptococcus troglodytae: SRT_06710
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Entry
SRT_06710 CDS
T06912
Name
(GenBank) ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
strg
Streptococcus troglodytae
Pathway
strg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
strg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SRT_06710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
strg03019
]
SRT_06710
Messenger RNA biogenesis [BR:
strg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SRT_06710
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Lipase_bact_N
Motif
Other DBs
NCBI-ProteinID:
BAQ23932
UniProt:
A0A1L7LIT3
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Position
675180..676844
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AA seq
554 aa
AA seq
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MSDIKIIALGGVRENGKNFYVAEVNDAIFILDAGLKYPENEQLGVDVVIPNLDYLIENKK
RVQGIFLTHGHADAIGALPYLLSDVKAPVFGSELTIELAKLVVKNNDATKKFHNFHVVDA
QTEIEFDDAIISFFKTTHSIPESLGIVVGTKEGNIVYTGDFKFDQAASKLYQTDLARIAE
IGREGVLALLSDSANADSTAQIASEAEVGIEMEQVISNWEGRIIVAAVASNLVRIQQVFD
SAANNGRRVVLTGYDVENIVRTAIRLKKLSLVDEKLIVKPKDMHKFEDHELIILETGRMS
EPLNGLRKMAIGRHRYVEIKDGDLVYIVTTPTVSKEAVVARVENMIYKAGGNVRLIAQDL
RVSGHANGRDLQLMINLLKPKYLFPIQGEYRELAAHADLALEIGMFPENIYIMKHGDIMV
YDKKDGFLHEGSIPAGDVMIDGNAIGDVGNIVLRDRKVLSEDGIFIIALTVNKKEKKIIS
RAKINTRGFVYVKKSRDILRESADIVNKAVENYLQQDTFDWGELKSIVRDEIGKFLFEQT
KRRPAILPVVMEVR
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacattaaaattattgccctaggcggagttcgtgaaaatggtaagaacttctat
gtggcagaagtcaacgatgccattttcattcttgatgctgggcttaagtatccagaaaat
gaacagttaggtgttgatgttgttattcctaatctggattatctgattgaaaataaaaag
cgtgtacagggaatttttttaacccatggacatgctgatgctattggtgctttgccttat
ttgttgagtgatgtcaaagctccggtatttggttctgagttaacaattgaactagctaag
ttggtcgttaaaaacaacgatgcaactaagaaattccataatttccatgttgttgatgct
caaactgaaattgaatttgacgatgctattatttcttttttcaagactacccattctata
ccagaaagtttaggaattgtggttggcactaaagaaggcaatattgtttatacaggtgat
tttaagtttgaccaagcagccagtaagctttatcagactgatttggctcgtattgctgaa
attggccgtgaaggtgttctggcacttttatcagattctgcgaatgctgacagtactgct
caaattgccagtgaagctgaagtaggcattgaaatggaacaagtcatttccaattgggaa
gggcggattatcgtcgctgcagtggcctctaatcttgttcgtattcaacaagtctttgat
tcagctgctaataatggccgccgtgttgtactgacaggttatgatgttgaaaatattgtt
cgaacagctatccgtcttaaaaagctttctctggttgatgaaaaacttattgtcaaacca
aaagatatgcataaatttgaagatcatgaactcattattttagaaactggtcggatgagc
gagccactcaatggtttaagaaaaatggctattggccgtcatcgttatgttgaaattaaa
gatggtgatttagtctatattgtaacaacgcctactgtttctaaggaagccgttgttgcg
cgtgttgagaatatgatttataaggctgggggtaatgtgagactcattgctcaggactta
cgcgtatctggacatgctaatggtcgtgaccttcagctgatgattaacctgcttaagccc
aaatatctcttccctatacaaggggaatatcgtgaattagctgcccatgctgatttagct
cttgaaataggcatgtttccggaaaatatttatatcatgaaacatggtgacattatggtt
tatgataaaaaggatggtttcttacatgaaggcagtatcccagctggagatgtcatgatt
gatggtaatgctattggtgatgttggtaatattgttttacgagaccgcaaggtgctttct
gaagatggtatctttatcattgccttaactgtcaataaaaaagaaaagaaaatcatttca
agagctaaaatcaatacacgtggttttgtttatgtcaagaaaagccgtgatattttacgc
gaaagcgcagatattgtcaataaggctgttgaaaattatttacaacaagatacgtttgat
tggggagaattgaaatctattgttcgtgatgaaattggtaaatttctttttgaacaaacg
aagcgtcgtccagccatcttaccagtagttatggaagttagataa
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