Streptacidiphilus sp. P02-A3a: GXP74_23430
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Entry
GXP74_23430 CDS
T08580
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
strh
Streptacidiphilus sp. P02-A3a
Pathway
strh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
strh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GXP74_23430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
strh03400
]
GXP74_23430
Enzymes [BR:
strh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GXP74_23430
DNA repair and recombination proteins [BR:
strh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GXP74_23430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
QMU70719
LinkDB
All DBs
Position
complement(5410673..5411566)
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AA seq
297 aa
AA seq
DB search
MSERVPTQVEGHRLVLSHLDKVLWPRTGTTKAAALSFFAQVAPAMLPHVRRRPASFLRFP
DGVEGQRFYAKNPPPGLPDWVPTVGVPGRDGVKPHVAVDSLAVLMAMANLGALEVHVPQW
SAGSGPDLHDRLVVDLDPGPGADVVDCCRAALWVRQALAADGLGCWVKTSGSKGLHLLAP
LRPTGEEAVLAYAKGLARRLESGHPELMVSSIAKARRHGRVLLDAGQNSSAKTTAAPYTL
RALPVPAVSTPLTWDEVAACGSAEELAFTPDQVLARVADHGDLLAGLCDPEQAAPLP
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaacgggttccgacgcaggtcgaggggcaccggctggtgctgtcccacctggac
aaggtgctctggccccggaccgggaccaccaaggcggcggcgctgtccttcttcgcccag
gtggccccggcgatgctgccgcacgtgcggcgtcggcccgcctcgttcctgcgcttcccg
gacggggtcgagggccagcggttctacgccaagaacccgccgccggggctgcccgactgg
gtacccacggtcggggtgccgggccgggacggcgtcaagccgcacgtcgcggtcgacagc
ctcgcggtgctgatggccatggcgaacctgggcgcgctggaggtccacgtgccgcagtgg
agtgccggaagcgggccggacctgcacgaccggctggtggtggacctggacccggggccg
ggggccgacgtggtggactgctgccgggcggcgctgtgggtacgccaggcgctggcggcg
gacggcctcggctgctgggtgaagacctccggcagcaagggcctgcacctgctggcaccg
ctgcggccgaccggcgaggaggcggtgctggcgtacgcgaaggggctggcccggcggctt
gagagcgggcatccggagctgatggtcagttcgatcgccaaggcgcggcggcacggccgg
gtgctgctggacgccgggcagaactccagcgcgaagaccacggccgcgccgtacacactc
cgcgcactgccggtgccggccgtctccaccccgctgacctgggacgaggtggcggcctgc
ggttcggccgaggagctggcgttcaccccggaccaggtgctggcgcgggtggccgaccac
ggcgacctgctggccgggctgtgcgacccggagcaggccgcgccgctgccgtag
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