Streptacidiphilus sp. P02-A3a: GXP74_35730
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Entry
GXP74_35730 CDS
T08580
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
strh
Streptacidiphilus sp. P02-A3a
Pathway
strh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
strh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GXP74_35730 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
strh03400
]
GXP74_35730 (mfd)
Enzymes [BR:
strh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GXP74_35730 (mfd)
DNA repair and recombination proteins [BR:
strh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GXP74_35730 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
AAA_22
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QMU72810
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All DBs
Position
complement(8432815..8436399)
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AA seq
1194 aa
AA seq
DB search
MSLTGLLDVVASDPALVEAARSALAGDRRHLDLVGPPAARPFAVAALARALADASKGNRG
RPVLAVTATGREAEDLAAALGSLLPPDSVAEFPAWETLPHERLSPRSDTVGRRLAVLRRI
VHPRADDPATGPLQVIVAPIRSVLQPQVKGLAELVPVSLAVRQEVNLEDLVRRLAAAAYQ
RVELVEKRGEFAVRGGILDVFPPTEEHPLRVEFWGDEVEEIRYFKVADQRSLEVAQHGLW
APPCRELLLTDEVRARASELAAEHPELADILDRIAQGIAVEGMESLAPVLVDEMELLVDV
LPQGSVAVVCDPERVRTRAADLVATSEEFLHASWVAAASGGDRPLDVGAASLWSIADVRD
HAATIGLPWWSVSPFAADDEVLTGPEVMHLGMHPAESYRGDTARAIADAKGRLADGWRVV
LVTEGHGPASRIAEMLSGEGIGARLVPDLTEPPVPDVVHVSCGSIEHGLVAEGLRLLVLT
ETDLAGQRSSTKDMRRMPSRRRNAVDPLSLQSGDYVVHEAHGVGRYVEMVQRTVQGATRE
YLVLEYAPAKKGQPGDRLFVPTDQLEQVTKYVGGESPSLHRLGGADWTKTKSRAKKAVKE
IAGDLIRLYSARMAAPGHAFGGDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMD
RLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFSTFSERYSNFPVVVKAL
SRFQSDTEAKAVLEGLRDGSVDIVIGTHRLFSAETRFKDLGLVIVDEEQRFGVEHKEQLK
KLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGAYDEKQISAAIR
RELLREGQVFYIHNRVESIDKAAARLKELVPEARIATAHGQMGETALEKVVVDFWEKEFD
VLVSTTIVESGIDIANANTLIVERGDTFGLSQLHQLRGRVGRGRERGYAYMLYPPEKPLT
ETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRMVGEAV
AEYRENLDGGGAPEEEPLDVKIELPVDAHLPHDYAPGERLRLQAYRSIAAVNSEEDIAAV
RAELTDRYGKLPEPVENLLLVAGLRLFARRCGIADITLQGQNIRFGPVELRESQELRLQR
LYPRTQVKASTRLLLVPRPSTGRIGGKPVVGRELLSWCAEFLSAIFDELATAKR
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgaccggcctgctagacgttgtcgcgtccgacccggccctcgtcgaggcggcg
cggtccgcgctcgccggggaccgccgccacctggacctggtcggtccgcccgcggcccgg
cccttcgccgtggccgcgctcgcccgcgccctcgccgacgcctccaagggcaaccggggc
cgcccggtgctggcggtcaccgccaccggccgcgaggccgaggacctggcggcggcgctg
ggctcgctgctgccgcccgacagcgtcgccgagttcccggcctgggagacgctgccgcac
gagcggctctcgccgcgctccgacacggtcggccgcaggctcgcggtgctgcgccggatc
gtccacccgcgcgccgacgacccggccaccggaccgctgcaggtgatcgtggcgcccatc
cgcagcgtgctccagccgcaggtcaaggggctggccgagctggtcccggtgagcctggcg
gtgcgccaggaggtgaacctggaggatctcgtccggcggctggccgcggccgcctaccag
cgggtggaactggtcgagaagcgcggcgagttcgcggtgcgcggcggcatcctggacgtc
ttcccgccgaccgaggagcacccgctgcgggtggagttctggggcgacgaggtcgaggag
atccgctacttcaaggtcgccgaccagcgctcgcttgaggtggcccagcacggcctgtgg
gcgcccccctgccgggagctgctgctcaccgacgaggtccgggcccgggcctcggagctc
gccgccgagcacccggagctcgcggacatcctggaccggatcgcccaggggatcgcggtc
gagggcatggagtcgctggccccggtgctggtcgacgagatggaactgctggtggacgtg
ctgccgcagggcagcgtcgcggtggtctgcgacccggagcgggtccgcaccagggccgcc
gacctggtcgccaccagcgaggagttcctgcacgcctcctgggtggccgcggcctccggc
ggcgaccggccgctggacgtgggcgcggcctcgctctggtcgatcgcggacgtccgcgac
cacgccgcgacgatcggcctgccctggtggtcggtcagcccgttcgcggccgacgacgag
gtgctgaccggtcccgaggtgatgcacctggggatgcacccggccgagtcctaccggggc
gacaccgcccgggcgatcgccgacgccaagggcaggctggccgacggctggcgggtggtg
ctggtcaccgagggccacggcccggcgtcccggatcgccgagatgctgtccggcgagggc
atcggcgcccggctggtgcccgacctgaccgagccgccggtcccggacgtggtgcacgtc
tcctgcggctcgatcgagcacggcctggtcgccgagggcctgcggctgctggtgctcacc
gagaccgacctggccgggcagcgctcctccaccaaggacatgcggcggatgccctcgcgc
cgccggaacgcggtcgacccgctgtcgctccagtccggcgactacgtggtgcacgaggcg
cacggcgtgggccgctacgtggagatggtgcagcgcaccgtccagggcgcgacccgcgag
tacctggtgctggagtacgccccggcgaagaagggccagccgggcgaccgtctcttcgtg
cccaccgaccagctggagcaggtcaccaagtacgtcggcggcgagtcgccgtcgctgcac
cggctcggcggcgcggactggaccaagaccaagtcgcgggcgaagaaggcggtcaaggag
atcgccggggacctgatccggctgtactcggcccggatggccgcccccgggcacgccttc
ggcggcgacacgccctggcagcgcgagctggaggacgccttcccctacgcggagaccccg
gaccagctgaccaccatcgccgaggtcaaggaggacatggagaagtcggtcccgatggac
cggctgatctgcggcgacgtcggctacggcaagaccgagatcgcggtgcgggcggccttc
aaggcggtccaggacggcaagcaggtggccgtgctggtgcccaccacgctgctggtgcag
cagcacttctccaccttctccgagcggtacagcaacttcccggtggtggtgaaggcgctg
tcccggttccagagcgacaccgaggcgaaggcggtgctggaggggctgcgcgacggcagc
gtggacatcgtcatcggcacccaccggctgttctccgcggagacccggttcaaggacctc
ggcctggtgatcgtcgacgaggagcagcgcttcggcgtcgagcacaaggagcagctgaag
aagctccgggccaacgtcgacgtgctgaccatgtccgcgaccccgatcccgcgcaccctg
gagatggcggtcaccggcatccgcgagatgtccaccatcaccaccccgcccgaggagcgg
cacccggtgctgaccttcgtcggcgcgtacgacgagaagcagatctccgccgcgatccgg
cgcgagctgctgcgcgagggccaggtcttctacatccacaaccgggtcgagtcgatcgac
aaggcggcggcccggctcaaggagctggtgccggaggcccggatcgcgaccgcgcacggg
cagatgggcgagaccgcgctggagaaggtggtggtggacttctgggagaaggagttcgac
gtcctggtctccaccaccatcgtggagtccggcatcgacatcgccaacgcgaacaccctg
atcgtcgagcgcggcgacaccttcggcctgtcccagctgcaccagctgcgcggacgcgtc
ggccggggccgcgagcgcggctacgcgtacatgctgtacccgccggagaagccgctgacc
gagaccgcgcacgagcggctggccaccatcgcccagcacaccgagatgggcgcgggcatg
tacgtggcgatgaaggacctggagatccgcggcgcgggcaacctgctcggcggcgagcag
tccgggcacatcgcgggcgtcggcttcgacctgtacatccggatggtcggcgaggccgtc
gccgagtaccgggagaaccttgacggcggcggcgccccggaggaggagccgctggacgtc
aagatcgagctgccggtggacgcccacctgccgcacgactacgcgcccggcgagcggctg
cggctccaggcgtaccggtcgatcgcggcggtgaactccgaggaggacatcgcggcggtc
cgcgccgagctcaccgaccgctacggcaagctgccggagccggtggagaacctgctgctg
gtggccgggctgcggctgttcgcgcggcgctgcggcatcgccgacatcaccctgcagggc
cagaacatccgcttcggaccggtggagctgcgcgagtcgcaggagctgcggttgcagcgg
ctctacccgcgcacccaggtgaaggcgtcgaccagactgctgctggtgccccggcccagc
accgggcggatcggcggcaagccggtggtcggccgggagctgctgtcctggtgcgcggag
ttcctcagcgccatcttcgacgagctggccacggccaagcggtaa
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