Peterkaempfera bronchialis: C7M71_002865
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Entry
C7M71_002865 CDS
T05561
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
stri
Peterkaempfera bronchialis
Brite
KEGG Orthology (KO) [BR:
stri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
stri03016
]
C7M71_002865
Enzymes [BR:
stri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
C7M71_002865
Transfer RNA biogenesis [BR:
stri03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
C7M71_002865
Prokaryotic type
tRNA splicing ligases
C7M71_002865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AXI76568
UniProt:
A0A345SS63
LinkDB
All DBs
Position
complement(638821..640233)
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AA seq
470 aa
AA seq
DB search
MDLTQIDRYEFRVERRGAMRVPGVVFASRALLSDAGQSLEQVRNVATLPGIVEASYAMPD
VHWGYGFPIGGVAATDPAQGGVVSPGGVGFDISCGVRLLAADLTAQELAPVLGRLMDALD
PAVPRGMTRGGVWTPHDRDELRRILTDGSRHALERGHGEQRDLDRCEDGGAVDGADPGQV
GERALERGLHQVGSLGSGNHFLEVQRVAEVYDAPVATAFGLHPGQVCVMIHCGSRGLGHQ
ICGDQVRRMEQTMRQYGIQVPDRQLACAPVDSPAGQDYLAAMAAAANYGRVNRHMLAEAA
RRVFAEVTGARLDLVYDISHNLAKLEEHEVDGVPRWLCVHRKGATRALPPGHPDLPPDLR
ATGQPVLIPGTMGTASYVLTGVPGGRAFHSTCHGAGRVQSRHQAARSVSGRQLRDRLEAQ
GIAVRPSSWRGLAEEHPGAYKDVAAVVEAGEGAGLCRSVARLVPLGVVKG
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggacctcacccagatcgaccgctatgagttccgggtcgagcggcggggcgcgatgcgg
gtcccgggcgtggtgttcgcctcccgggcgctgctgagcgacgccggacagtcgctggag
caggtccgcaatgtcgccaccctcccgggcatcgtcgaggcgtcgtacgccatgccggat
gtgcactgggggtacggcttcccgatcggcggcgtcgccgcgaccgaccccgcgcagggc
ggcgtggtctccccgggcggggtgggcttcgacatctcctgcggcgtccggctgctcgcg
gccgacctcaccgcccaggagctggcgcccgtcctcggtcggctgatggacgccctggac
cccgccgtaccgcgcggaatgacccggggcggcgtctggaccccgcacgaccgggacgag
ctgcgccgcatcctcaccgacggctcccgccacgccctggagcggggccatggcgagcag
cgcgacctggaccgctgcgaggacggcggcgcggtggacggggccgaccccggccaggtc
ggcgaacgggccctggagcgcgggctgcaccaggtcggcagcctcgggtccggcaaccac
ttcctggaagtgcagcgggtcgccgaggtgtacgacgcccccgtcgccaccgccttcggc
ctgcaccccgggcaggtctgcgtgatgatccactgcggttcgcgcggcctgggccaccag
atctgcggcgaccaggtacgccggatggagcagaccatgcgccagtacggcatccaggtc
cccgaccggcagctggcctgcgccccggtggactccccggccgggcaggactacctggcg
gccatggccgccgccgccaactacggccgggtcaaccgccatatgctcgccgaggcggcc
cgccgggtcttcgccgaggtcacgggcgcccggctggacctggtctacgacatctcgcac
aacctcgccaagctggaggagcacgaggtcgacggcgtgccccggtggctctgcgtgcac
cgcaagggcgccacccgggcgctcccgccgggccaccccgacctgccgccggacctgcgc
gcgaccgggcagccggtgctgatcccgggcaccatgggcaccgcctcctatgtgctcacc
ggcgtcccgggcggccgggccttccactccacctgccatggcgcgggccgggtgcagagc
cgccaccaggcggcccgctcggtcagcggccggcagctgcgcgaccggctggaggcccag
ggcatcgcggtgcgcccgtcctcctggcgggggctggcggaggagcaccccggcgcctac
aaggacgtcgccgccgtggtggaggcgggcgagggggccggtctgtgccggtccgtcgcc
cgcctggtaccgctcggcgtggtcaagggctga
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