Peterkaempfera bronchialis: C7M71_012065
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Entry
C7M71_012065 CDS
T05561
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
stri
Peterkaempfera bronchialis
Pathway
stri03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
stri00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C7M71_012065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
stri03021
]
C7M71_012065
03400 DNA repair and recombination proteins [BR:
stri03400
]
C7M71_012065
Enzymes [BR:
stri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C7M71_012065
Transcription machinery [BR:
stri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C7M71_012065
DNA repair and recombination proteins [BR:
stri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C7M71_012065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
AXI78069
UniProt:
A0A345SWG4
LinkDB
All DBs
Position
complement(2749887..2753804)
Genome browser
AA seq
1305 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITWVDDERRTRDLPSLEAHVSVERQQVEQRRDSDLEARAKKLEAD
LGELEAEGAKADVRRKVREGAEREMKQLRDRAQRELDRLDEVWSRFKNLKVQDLEGDELL
YRELRDRFGTYFSGAMGAAALQKRLESFDLEEEAERLREIIKTGKGQKKTRALKRLKVVS
AFLQTRNKPNGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTSDRDDVKGGGR
SFTSTAEALMAFDARELDLQAPIDVRLPAGTVPPRSWIPPVDESGEFSGPAEGTPGWVDG
EPFRLTTTLGRALFNELLPEDYPFVDYEVGKKQLSAIVNDLAERYPKVVVAATLDNLKAA
GFHWATRSGVTVSISDVVVPPSKPQILEGYEAQAEKIQKQYERGLITNDERKQELVAIWT
KATNEVAEAMNANFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKAS
FREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKL
EIASVGADGVLRKAEDVETSVYARCLAEDITVDGKVLAQAGTDLGDVLIDELVRHGVSTV
KTRSILTCESAVGTCAMCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGV
AGDDITQGLPRVVELFEARTPKGVAPISEAAGRVRVEDTEKTRKLVVTPDDGTEEIAYPV
SKRVKLLVGEGDAVEVGQKLTMGATNPHDVLRILGQRAVQVHLVQEVQKVYNSQGVSIHD
KHIEIIIRQMLRRVTIIESGDAELLPGELVERGRFETENRRVVSEGGHPASGRPQLMGIT
KASLATESWLSAASFQETTRVLTDAAIHAKSDPLLGLKENVIIGKLIPAGTGLPRYRNIR
VEPTEEAKAAMYSAVGYDDYDISPFGAGSGQAVPLEDYDYGPYTG
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgagctgcgcatcggcctggccaccgccgacgacatt
cgccagtggtcccacggcgaggtcaagaagcccgagaccatcaactaccgcactctgaag
cccgaaaaggacggactcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggtaagtacaagcgcgtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgcgccc
gtcacccacatctggtacttcaagggtgtgccgagccgcctcggctacctgctcgacctg
gcgccgaaggacctggagaaggtcatctacttcgccgcctacatgatcacctgggtggac
gacgagcgccgcacccgcgacctgccgtcgctggaggcccatgtctccgtcgagcgccag
caggtcgagcagcgccgcgactccgacctggaggcccgcgccaagaagctggaggccgac
ctcggcgagctggaggccgagggcgccaaggccgatgtgcgccgcaaggtgcgcgagggc
gccgagcgcgagatgaagcagctgcgcgaccgcgcccagcgcgagctggaccgcctcgac
gaggtgtggagccgcttcaagaacctcaaggtccaggacctggagggcgacgagctgctc
taccgcgagctgcgcgaccgcttcggcacctacttctccggtgcgatgggcgccgccgcg
ctccagaagcggctggagtccttcgacctggaggaggaggccgagcgcctccgcgagatc
atcaagaccggcaagggccagaagaagacccgggcgctcaagcgcctcaaggtcgtctcc
gccttcctgcagacccgcaacaagcccaacggcatggtgctggactgcgtcccggtgatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctcaagcggctgctggacctc
ggtgcgcccgagatcatcgtcaacaacgagaagcggatgcttcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccggccggtgaccggtccgggcaaccgcccgctgaag
tcgctctccgacatgctcaagggcaagcagggccgcttccggcagaacctgctcggcaag
cgcgtcgactactcggcccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggcctgcccaaggccatggcgctggagctcttcaagccgtttgtgatgaagcgcctg
gtggacctcaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgcgcccgc
cccgtggtgtgggacgtcctcgaagaggtcatcgccgagcacccggtgctgctcaaccgt
gcgcccaccctgcaccgcctgggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggcgaccag
atggccgtccacctgccgctgtcggcggaggcccaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccgcccggtgaccatgcccacccaggac
atggtgctcggcctcttcttcctcacctccgaccgtgacgacgtcaagggcggcggccgg
tcgttcacctcgaccgccgaggccctgatggccttcgacgcccgcgagctggacctccag
gccccgatcgacgtccgactgcccgccggcaccgtgccgccgcgcagctggatcccgccg
gtcgacgagtccggcgagttcagcggcccggccgaggggacccccggctgggtcgacggc
gagcccttccggctcaccaccaccctgggccgcgcgctcttcaacgagctgctgcccgag
gactaccccttcgtcgactacgaggtcggcaagaagcagctctcggcgatcgtcaacgac
ctcgccgagcgctacccgaaggtcgtcgtcgcggccaccctggacaacctcaaggcggcc
ggcttccactgggccacccgctccggtgtcaccgtgtcgatctccgacgtcgtggtgccg
ccgagcaagccccagatcctggagggctacgaggcgcaggccgagaagatccagaagcag
tacgagcgcggtctgatcaccaacgacgagcgcaagcaggaactcgtcgcgatctggacc
aaggcgaccaacgaggtcgccgaggcgatgaacgcgaacttcccgaagaccaaccccatc
ttcatgatggtggactcgggtgctcgtggaaacatgatgcagatgcggcagatcgccggt
atgcgcggtctggtgtccaacgccaagaacgagaccatcccgcggccgatcaaggcgtcg
ttccgtgagggcctcaccgtgctggagtacttcatctccacccacggtgcccgtaagggt
ctggcggacaccgccctgcgtaccgccgactcgggctacctcacccgtcgtctggtcgac
gtctcgcaggacgtgatcatccgcgaggaggactgcggcaccgagcgcggcctcaagctg
gagatcgcctccgtgggcgccgacggcgtgctgcgcaaggcggaggacgtcgagaccagc
gtgtacgcgcgctgcctcgccgaggacatcaccgtcgacggcaaggtgctggcccaggcc
ggtaccgacctgggtgacgtgctgatcgacgagctggtccggcacggtgtctccaccgtc
aagacccgctcgatcctcacctgcgagtccgcggtgggcacctgcgccatgtgctacggc
cgctcgctggccaccggcaagctggtggacatcggcgaggccgtcggcatcatcgccgcc
cagtccatcggtgagcccggcacccagctgacgatgcgtaccttccacaccggtggtgtg
gccggtgacgacatcacccagggtctgccgcgtgtcgtcgagctcttcgaggcccgtacc
cccaagggtgtggccccgatcagcgaggcggccggccgggtccgcgtggaggacaccgag
aagacccgcaagctcgtggtcacccccgacgacggcaccgaggagatcgcctacccggtc
tccaagcgggtgaagctgctggtcggcgagggcgacgcggtcgaggtcggccagaagctg
accatgggcgccaccaacccgcacgatgtgctgcgcatcctgggccagcgggccgtccag
gtccacctggtgcaggaagtgcagaaggtctacaactcgcagggcgtgtcgatccacgac
aagcacattgagatcatcatccggcagatgctccgccgggtgacgatcatcgagtccggc
gacgcggagctgctgccgggcgagctggtcgagcgtggccgcttcgagaccgagaaccgt
cgcgtggtctccgagggcggtcaccccgcctccggccgtccgcagctgatgggtatcacc
aaggcctcgctggccaccgagtcctggctgtcggccgcctccttccaggagacgacccgg
gtgctcaccgacgcggcgatccacgccaagtcggacccgctgctgggcctcaaggagaac
gtcatcatcggcaagctcatcccggccggtacgggtctgccccgctaccggaacatccgg
gtcgagcccaccgaggaggccaaggccgcgatgtactcggccgtcggctacgacgactac
gacatctcgcccttcggcgccggctccggccaggcggtcccgctggaggactacgactac
ggcccgtacaccggctga
DBGET
integrated database retrieval system
