Streptomyces sp. JH002: H7827_02345
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Entry
H7827_02345 CDS
T11115
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
strj Streptomyces sp. JH002
Brite
KEGG Orthology (KO) [BR:
strj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
strj03016
]
H7827_02345
Enzymes [BR:
strj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
H7827_02345
Transfer RNA biogenesis [BR:
strj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
H7827_02345
Prokaryotic type
tRNA splicing ligases
H7827_02345
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XVJ74518
LinkDB
All DBs
Position
complement(589593..590786)
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AA seq
397 aa
AA seq
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MSYTEVPGARVPIRMWADPATVEDQAMRQLQNVATLPWIEGLAVMPDVHFGKGATVGSVI
AMRGAVCPAAVGVDIGCGMTAVKTSLTANDLPGDLSRLRSRIEQSIPVGFGLHKEPVDPA
KIYGLPGAGWDDFWARFDGIAQQVRFRRERAGQQMGSLGGGNHFIEVCVDSHGVVWLMLH
SGSRNIGKELADFHIGQAQKLPHNQGLVDRDLAVFVADTPQMAAYRHDLFWAQEYARRNR
EVMMGLLRTVIIKEFKKAKPTFGDTISCHHNYVAEERYDGVDLLVTRKGAIRAGSGEFGI
IPGSMGTGSYIVKGLGNPASFQSASHGAGRRMSRNQAKKRFTARDLAEQTQGVECRKDSG
VVDEIPGAYKPIEQVIDAQRDLVEVVAELKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgagctacaccgaagtgccgggcgcccgtgttccgatccggatgtgggccgatccggcg
accgtcgaggaccaggcgatgcgtcagctccagaatgtggcgacgcttccgtggatcgag
ggcctggccgtgatgcccgacgtgcacttcggaaagggcgccacggtcggctcggtcatc
gcgatgcgcggggcggtctgtccggccgcggtgggtgtcgacatcggctgcgggatgacg
gcggtgaagacctcactgaccgcgaacgatctgccgggcgatctctcccggctccgttcg
cgcatcgaacagtcgatcccggtcggattcggtctgcacaaggaaccggtggatccggcg
aagatctacggactgcccggcgcgggctgggacgatttctgggcccgcttcgacgggatc
gcccagcaggtccgtttccggcgggaacgggcgggccagcagatgggatcgctcggaggc
ggaaatcattttatcgaagtatgtgtagatagccatggcgtggtatggctgatgctgcac
tccgggtcccgcaatatcggcaaggagctggccgacttccacatcggacaggcccagaag
ctgccgcacaaccagggactcgtggaccgcgatctggcggtgttcgtcgcggacaccccg
cagatggccgcctaccggcacgacctgttctgggcgcaggagtacgcccggcgcaaccgt
gaggtcatgatggggctgctgcgcaccgtgatcatcaaggagttcaagaaggcgaagccc
acgttcggcgacaccatctcgtgtcatcacaactatgtggccgaggaacggtacgacggt
gtggacctgctggtcacccgcaagggagcgatccgggcgggcagcggcgagttcgggatc
atccccggttcgatgggcaccggttcgtacatcgtcaaggggctcgggaacccggcctcc
ttccagtccgcctcgcacggcgcggggcggcggatgagccgcaaccaggcgaagaagcgg
ttcaccgcacgcgatctggccgagcagacccagggcgtggagtgccgcaaggacagcggg
gtcgtggatgagatccccggcgcctacaagccgatcgagcaggtcatcgacgcccagcgg
gacctggtggaggtagtggccgagctgaagcaggtggtgtgcgtcaagggctga
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