Streptomyces sp. JH002: H7827_16125
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Entry
H7827_16125 CDS
T11115
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
strj Streptomyces sp. JH002
Brite
KEGG Orthology (KO) [BR:
strj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
strj03032
]
H7827_16125 (topA)
03400 DNA repair and recombination proteins [BR:
strj03400
]
H7827_16125 (topA)
Enzymes [BR:
strj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
H7827_16125 (topA)
DNA replication proteins [BR:
strj03032
]
Prokaryotic type
DNA Topoisomerases
H7827_16125 (topA)
DNA repair and recombination proteins [BR:
strj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
H7827_16125 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
XVJ77003
LinkDB
All DBs
Position
3553868..3556777
Genome browser
AA seq
969 aa
AA seq
DB search
MSPTSETTNGGRRLVIVESPAKAKTIKGYLGPGYVVEASVGHIRDLPNGAAEVPAKYKGE
PWARLGVNVDAGFQPLYVVNSDKKDQVRKLKELLAESDELYLATDEDREGEAIAWHLREV
LKPKVPVRRMVFHEITRDAIRAAVNNPRELNQLLVDAQETRRILDRLYGYEVSPVLWKKV
MPRLSAGRVQSVATRLVVERERERIAFHPAAYWDLTGTFATDGGGADGGPDTFGARLVSV
DGRRIAQGRDFGPDGQLKNPGQVRQLDEAAARELAQSLAGAAFSVRSVESKPYRRSPYAP
FRTTTLQQEASRKLGMGAKSTMQVAQRLYENGFITYMRTDSTTLSETAVAAARAQVTQLY
GREYLPDKPRTYASKVKNAQEAHEAIRPSGDRFRTPAETGLTGEQFRLYELIWKRTVASQ
MKDAVGQSVAVRVAGTGAGGQDCEFGATGKIITFHGFMKAYVEGADDPNAELDDRERRLP
QVAEGDPLAARELAADGHSTKPPARYTEASLVKELEEREIGRPSTYASIIGTILDRRYVF
KKGTALVPSFLSFAVVNLLEQHFGRLVDYDFTAKMEDDLDRIATGDAEAVPWLRRFYFGE
GGEGVGVAAEAGNGDGDHLGGLKELVTDLGAIDAREISSFPVGEGIVLRVGRYGPYVEAP
PEEGAAEGEPGKRADVPDELPPDELTVELAKELLAKPSGDFELGTDPVSGHPIVGRDGRY
GPYVTEVLPEGTPKTGKNAVKPRTASLFKTMRLDTITLDDALKLLSLPRVVGTDPESGDD
ITAQNGRYGPYLKKGTDSRSLESEEQLFTVTLEQAQAIYAQPKKRGRAAAKPPLKELGTD
PVTQAPVVVKDGRFGPYVTDGETNATLRRDDDPETITPERGFELLAEKRAKGPAKKTAKK
TAAKKTTKKAAAKKTTTKKAAAKTTTAKKTAAKKTSTATKTAAKKTTAAKKTSAAKKATS
KAENGPSEE
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
ttgtccccgaccagcgagaccacgaacggcggacgccggcttgtcattgtcgagtcgccc
gccaaggccaagacgatcaagggctacctcggcccgggctatgtggtagaggcgagcgtc
ggacacatccgcgatctgccgaacggtgccgccgaggttccggccaagtacaagggggag
ccctgggcccggctcggcgtgaacgtggacgccggtttccagcccctgtacgtcgtcaac
agtgacaagaaggaccaggtcagaaagctcaaggagctgctggccgaatccgacgagctc
tacctggccaccgatgaggaccgcgagggcgaggcgatcgcctggcatctgcgcgaggtc
ctcaagcccaaggtgccggtgcgccggatggtcttccacgagatcacccgggacgccatc
cgggcggccgtcaacaacccgcgcgagctgaaccagctgctggtcgacgcgcaggagacc
cgccgcatcctcgaccggctgtacgggtacgaggtctcgccggtgctgtggaagaaggtc
atgccccggctgtcggcgggacgcgtgcagtccgtggccacccggctggtcgtggagcgc
gagcgcgagcggatcgcgttccacccggccgcgtactgggacctgacggggacgttcgcc
acggacggcggcggcgccgacggcggccctgacaccttcggcgcccgcctggtgtcggtc
gacggacggcgcatcgcgcagggccgcgacttcggcccggacgggcagctcaagaacccc
gggcaggtgcgccagctcgacgaggcggcggcgcgggagctggcgcagagcctggccggc
gcggcgttctccgtccgctcggtggagtccaagccgtaccggcgctccccgtacgcgccc
ttccgcaccaccaccctccagcaggaggcgtcgcgcaagctggggatgggcgcgaagtcc
accatgcaggtggcgcagcggctgtacgagaacggcttcatcacctacatgcggaccgac
tcgaccacgctgtcggagacggccgtggcggcggcgcgggcgcaggtgacgcagctgtac
gggcgggagtacctgccggacaagccgcgtacgtacgccagcaaggtgaagaacgcgcag
gaggcgcacgaggcgatccgcccctcgggcgaccgcttccgcaccccggccgagacgggc
ctgaccggcgagcagttccggctgtacgagctgatctggaagcggaccgtcgcctcgcag
atgaaggacgcggtcggccagtcggtggcggtgcgcgtcgccgggaccggcgcgggcggg
caggactgcgagttcggcgccaccggaaagatcatcacctttcacggcttcatgaaggcg
tacgtggagggcgcggacgaccccaacgccgaactggacgaccgcgagcggcggctgccg
caggtcgccgagggcgacccgctggccgcgcgcgagctggcggcggacgggcactccacc
aagccgccggcccggtacaccgaggccagcctggtcaaggagctggaggagcgggagatc
gggcggccgtccacgtacgcctcgatcatcggcaccatcctggaccggcgctacgtcttc
aagaaggggacggcgctggtgccgtccttcctgtccttcgccgtggtcaatctgctggag
cagcacttcgggcggctggtggactacgacttcaccgccaagatggaggacgacctcgac
cggatcgccaccggcgacgcggaggcggtgccgtggctgcgccgcttctacttcggtgag
ggcggcgagggcgtcggggtcgcggcggaggccggcaacggcgacggcgaccacctgggc
gggctgaaggagctggtcaccgacctgggcgcgatcgacgcccgggagatctcctccttc
ccggtcggcgagggcatcgtgctgcgggtgggccggtacggcccgtacgtggaggcgcca
cccgaggagggcgcggcggagggcgagccgggcaagcgcgcggacgtgccggacgaactg
ccgccggacgagctgacggtggagctggcgaaggagctgctggcgaagcccagcggcgac
ttcgagctgggcaccgacccggtcagcgggcacccgatcgtgggacgggacgggcggtac
ggcccgtacgtcacggaggtgctgccggagggcacgccgaagaccggcaagaacgccgtg
aagccgcgtaccgcctcgctgttcaagacgatgcggctggacacgatcacgctggacgac
gcgctgaagctgctgtcgttgccgcgtgtggtgggtaccgacccggagtccggtgacgac
atcaccgcgcagaacggccggtacggcccgtacctgaagaaggggacggactcgcgctcg
ctggagagcgaggagcagctgttcacggtcaccctggagcaggcgcaggcgatctacgcc
cagccgaagaagcgcgggcgggccgcggccaagccgccactgaaggagctggggaccgac
ccggtgacgcaggcgccggtggtggtgaaggacgggcggttcggtccctacgtgacggac
ggcgagacgaacgcgacgctgcggcgggacgacgatcccgaaaccatcacccctgaacgt
gggttcgagctgctggcggagaagcgggccaaggggccggcgaagaagaccgcgaagaag
accgcggccaagaagaccaccaagaaggccgcggcgaagaagacgaccacgaagaaggcc
gccgccaagaccaccacggcgaagaagaccgccgcgaagaaaacctcgacggcgacgaag
acggcggccaagaagacgactgcggcgaagaaaacctcagcggcgaaaaaggccacgtca
aaggccgaaaacggcccctcggaggagtag
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