Streptomyces sp. JH002: H7827_17870
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Entry
H7827_17870 CDS
T11115
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
strj Streptomyces sp. JH002
Pathway
strj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
strj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H7827_17870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
strj03021
]
H7827_17870
03400 DNA repair and recombination proteins [BR:
strj03400
]
H7827_17870
Enzymes [BR:
strj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H7827_17870
Transcription machinery [BR:
strj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H7827_17870
DNA repair and recombination proteins [BR:
strj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H7827_17870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
XVJ79440
LinkDB
All DBs
Position
3925338..3929237
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITYVDEERRTRDLSSLEAHVSVERQQIEQRRDSDLEARAKKQETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWNRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLETFDLNEEAARLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDEEEREVRGE
GRSFSSTAEAIMAFDSGELSLQAKIDIRFPIGSVPPRGWTPPVPAEGEGEWQQGDSFRMR
TTLGRALFNELLPEDYPFVDGSVGKKQLSQIVNDLAERYPKVVVAATLDNLKSAGYFWAT
RSGVTVAVSDIVVPEAKKQILENYEAQDEKVQKQYERGLITKDERTQELIAIWTKATNEV
AETMNDNFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLT
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLDIAAKG
ADGVLRKADNVESSVYARCLAEEIVVDGKVLAPAGTDLGDVLIDELVRHGVQTVKTRSVL
TCESAVGTCAMCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDIT
QGLPRVVELFEARQPKGVAPISESAGRVRIDETEKTKKVIVTPDDGTEETSYPVSKRARL
LVTEGDHVVVGQPLTVGAANPHEVLRILGQRAVQIYLVGEVQKVYNSQGVAIHDKHIEII
VRQMLRRVTIIESGDAELLPGELVERSKFEGENRRVVSEGGQPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLARYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYQG
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgaactgcggatcggcctggccaccgctgacgacatc
cgtcagtggtcacacggcgaggtaaagaagccggagaccatcaactaccgcacgctcaag
cccgaaaaggacggactcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgccgtgagcggatgggccacattgagctggccgctccc
gtcacgcacatctggtacttcaagggcgtgccctcgcggctcggctacctgctggacctg
gcgccgaaggacctggagaaggtcatctacttcgccgcgtacatgatcacgtacgtggac
gaggagcgccgcacccgcgatctgtcctcgctggaggcccacgtctccgtcgagcgccag
cagatcgagcagcggcgtgactccgacctggaggcccgcgccaagaagcaggagaccgac
ctcgcggaactggaggccgagggcgccaaggcggacgtccgccgcaaggtgcgcgaaggc
gccgagcgcgagatgaagcagctgcgcgaccgcgcccagcgggagatcgaccgcctggac
gaggtgtggaaccgcttcaagaacctcaaggtccaggacctggagggcgacgagctcctc
taccgtgagctgcgcgaccgcttcggcacctacttcgacggctcgatgggcgccgcggcg
ctgcagaagcgcctggagaccttcgacctcaacgaggaggccgcccggctgcgggagatc
atccgcaccggcaagggccagaagaagacccgcgccctcaagcggctcaaggtcgtctcc
gcgttcctgcagacctccaacagccccaagggcatggtcctggactgcgtcccggtgatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgtgtcatcaaccgcaacaaccgcctcaagcgtcttctcgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccggccggtcaccggcccgggcaaccgcccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccgcttccgtcagaacctgctgggcaag
cgcgtcgactactcggcccgttccgtgatcgtcgtcggcccccagctgaagctgcaccag
tgcggtctgcccaaggcgatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtggacctgaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgccagcgc
accgtggtgtacgacgtcctcgaagaggtcatcgccgagcacccggtcctgctgaaccgc
gccccgaccctgcaccgtctgggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctggtgtgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtccatctgccgctgtcggccgaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccggccggtgaccatgcccacccaggac
atggtgctgggcctgttcttcctcaccaccgatgaggaagagcgcgaggtgcgcggcgag
ggccggtccttctcctccaccgccgaagcgatcatggcgttcgactccggggagctctcg
ctccaggcgaagatcgacatccgcttcccgatcggctcggtgccgccccggggctggacc
ccgccggttccggccgagggcgagggcgagtggcagcagggtgacagcttccggatgcgg
acgaccctgggtcgtgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgac
ggctcggtgggcaagaagcagctctcccagatcgtgaacgacctggccgagcgctacccc
aaggtcgtcgtcgccgccaccctggacaacctcaagtccgccggttacttctgggccacc
cggtccggtgtcaccgtcgcggtctccgacatcgtcgttcccgaggccaagaagcagatc
ctcgagaactacgaggcgcaggacgagaaggtccagaagcagtacgagcgcggtctgatc
accaaggacgagcgcacgcaggagctcatcgcgatctggaccaaggcgaccaacgaggtc
gccgagaccatgaacgacaacttcccgaagaccaaccccatcttcatgatggtggactcc
ggggcccgcggaaacatgatgcagatgcgtcagatcgcgggtatgcgtggtctggtgtcc
aacgcgaagaacgagaccatcccgcgtccgatcaaggcgtccttccgcgagggcctgacc
gtgctggagtacttcatctccacccacggtgcccgtaagggtctggccgacaccgccctg
cgtaccgccgactccgggtacctcacccgtcgtctggtggacgtctcgcaggacgtcatc
atccgcgaggaggactgcggcaccgagcgcggcctcaagctggacatcgcggccaagggt
gccgacggtgtgctgcgcaaggccgacaacgtcgagtccagcgtgtacgcgcgctgcctc
gccgaggagatcgtcgtcgacggcaaggtgctggccccggccggcaccgacctgggcgac
gtgctcatcgacgagctcgtgcggcacggtgtgcagaccgtcaagacccgctccgtgctc
acctgtgagtcggcggtcggcacctgcgccatgtgctacgggcgttcgctggccaccggc
aagctggtggacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggtacccagctgacgatgcggaccttccacaccggtggtgtggccggtgaggacatcacc
cagggtctgccccgtgtggtcgagctcttcgaggcccggcagcccaagggtgtcgcgccg
atctccgagtcggccggccgggtgcggatcgatgagaccgagaagaccaagaaggtcatc
gtcaccccggacgacggcaccgaggagacctcctacccggtctccaagcgtgcccggctg
ctggtcaccgagggcgaccacgtcgtcgtcggccagccgctgaccgtgggtgccgccaac
ccgcacgaggtgctgcggatcctgggccagcgcgctgtccagatctacctggtcggcgag
gtccagaaggtctacaactcgcagggtgtggccatccacgacaagcacatcgagatcatc
gtccggcagatgctgcgccgggtgacgatcatcgagtcgggcgacgcggagctgctgccc
ggtgagctggtcgagcgctcgaagttcgagggcgagaaccgccgcgtggtgtccgagggc
ggtcagccggcctccggccgtccgcagctgatgggtatcaccaaggcgtcgctggccacc
gagtcgtggctgtcggcggcgtccttccaggagacgacccgggtgctcaccgacgcggcg
atcaacgccaagtcggactccctgatcggcctcaaggagaacgtgatcatcggtaagctc
atcccggccggtacgggtctggcccgttaccgcaacatccgggtggagccgaccgaggag
gcgaaggcggcgatgtactcggctgtcggctacgacgacatcgactactcccccttcggc
acgggctccggccaggcggtcccgctggaggactacgactacggtccgtaccagggctga
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integrated database retrieval system
