Streptomyces sp. JH002: H7827_18995
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Entry
H7827_18995 CDS
T11115
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
strj Streptomyces sp. JH002
Pathway
strj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
strj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H7827_18995 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
strj03400
]
H7827_18995 (mfd)
Enzymes [BR:
strj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H7827_18995 (mfd)
DNA repair and recombination proteins [BR:
strj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H7827_18995 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
UB2H
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
XVJ77516
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All DBs
Position
4140367..4143909
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AA seq
1180 aa
AA seq
DB search
MSLHGLLDAVVEDPALAEAVTAARAGTRRQVDLVGPPAARALSVAALARGAGRTVLAVTA
TGREAEDLAAALRSLLPPDGVVEYPSWETLPHERLSPRADTVGRRLAVLRRLAHPSAEDP
GAGPVSVVVAPIRSVLQPQVAGLGDLEPVSLRGGQSVQLERVTAALAAAAYQRVELVEKR
GEFAVRGGILDVFPPTEEHPLRVELWGDEIEEIRYFKVADQRSLEIAEHGLWAPPCRELL
LTDTVRERAAVLAEEHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPAGAMAV
VCDPERVRTRAADLVATSQEFLMASWAASAGGGDAPIDVGAASLRGIAEVREHAAELGMP
WWTVSPFSADATAEDDTVRLGLRAAESYRGDTARALADTKGWLADGWRVVYLTEGQGPAS
RTAEVLSGEGIAARLAARGLPGEIAPALVHVACGAIEHGFTDPALRLAVLTETDLTGQKA
AGRDGARMPARRRKTLDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLLVEYAPA
KRGQPGDRLFVPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLY
SARMAAPGHAFGPDTPWQRELEDAFPYAETPDQLTTIGEVKEDMEKSVPMDRLICGDVGY
GKTEIAVRAAFKAVQEGKQVAVLVPTTLLVQQHFGTFSERYAQFPVAVRALSRFQSESDS
KAVLEGLREGSVDVVIGTHRLFSSEVKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVL
TMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAALRRELLREGQV
FYIHNRVESIDRAAARLRAIVPEARIATAHGQMSESALEQVVVDFWEKKFDVLVSTTIVE
SGIDISNANTLIVERGDTFGLSQLHQLRGRVGRGRERGYAYFLYPPERPLTETAHERLAT
IAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRATLEA
GGGEPEEAPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIAAATTEEDIAAVREELTDRY
GPLPEPVENLLLVAGLRMLARSCGVGDITLQGNKIRFSPVELRESQELRLTRVYPGSVVK
RAAGQVLVPRPATARVGGKPLTGRQLLAWTGEFLTTIPGS
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggcctgctcgatgccgtcgtcgaagaccccgccctcgccgaggcggtc
accgccgcgcgcgccggcacgcgccggcaggtggatctcgtcggaccgcccgccgcccgg
gcgctgtccgtcgccgccctggcgcgcggcgccggacgtaccgtgctggccgtcaccgcc
accggtcgggaggccgaggacctggccgccgcgctgcgctcgctgctgcccccggacggc
gtcgtcgagtacccctcctgggagacgctgccgcacgagcggctctcgccgcgcgccgac
accgtcggccgccggctcgccgtcctgcgccgcctggcccacccgagtgcggaggacccg
ggcgccggccccgtctccgtcgtggtcgcgccgatccgctccgtgctccagccgcaggtg
gccgggctcggtgacctggagccggtcagcctgcggggcgggcagagcgtccagctggag
cgcgtgaccgccgcgctcgccgccgccgcgtaccagcgggtggagctggtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctcgacgtcttcccgcccaccgaggagcacccg
ctgcgggtggagctgtggggcgacgagatcgaggagatccgctacttcaaggtcgccgac
cagcggtccctggagatcgccgaacacggcctgtgggcgccgccgtgccgtgagctgctg
ctgaccgacaccgtacgggagcgggccgccgtgctcgccgaggagcacccggagctgggc
gaactgctcggcaagatcgccgagggcatcgcggtggagggcatggagtccctcgccccg
gttctggtcgatgacatggagctgctgctggacgtcctgcccgccggggcgatggccgtg
gtgtgcgacccggagcgggtccgcacccgggcggccgacctggtcgccaccagccaggag
ttcctgatggcctcctgggcggccagcgccggcggtggggacgcgcccatcgatgtcggc
gccgcctcgctgcgcggcatcgccgaggtgcgcgagcacgccgccgagctgggcatgccg
tggtggacggtcagcccgttcagcgcggacgccaccgccgaggacgacaccgtccggctg
gggctgcgggccgccgagtcctaccggggcgacaccgcgcgggcgctcgccgacaccaag
ggctggctggcggacggctggcgtgtcgtctacctcaccgagggccagggcccggcctcc
cgcaccgccgaggtgctgtcgggcgagggcatcgcggcccggctggcggccaggggcctg
ccgggcgagatcgcgcccgcgctggtccatgtggcctgcggcgcgatcgagcacggcttc
accgatccggcgctgcgcctggcggttctcaccgagaccgatctcaccggccagaaggcg
gccggccgcgacggcgcccggatgccggcccgccgccgcaagacgctggacccgctgacc
ctggaggccggcgactacatcgtccacgagcagcacggggtgggccgctacatcgagatg
gtgcagcgcaccgtgcagggcgcgacccgcgagtacctgctggtggagtacgccccggcc
aagcgcggccagcccggcgaccggctgttcgtccccaccgaccagctggagcaggtcacc
aagtacgtgggcggcgaggcgccgaccctgcaccggctgggcggcgcggactggaccaag
accaaggcgcgggcgaagaaggcggtcaaggagatcgccgccgacctgatcaagctgtac
tcggcgcggatggcggcccccgggcacgccttcggcccggacaccccctggcagcgggag
cttgaggacgccttcccgtacgccgagacccccgatcagctcaccacgatcggggaggtc
aaggaggacatggagaagtcggtcccgatggaccggctgatctgcggcgacgtcgggtac
ggcaagaccgagatcgcggtgcgtgccgcgttcaaggcggtgcaggagggcaagcaggtg
gcggtgctggtgcccaccaccctcctcgtgcagcagcacttcggcacgttctccgagcgg
tacgcgcagttcccggtggcggtgcgggcgctctcccgcttccagtcggagtccgactcc
aaggcggtgctcgaagggctgcgcgaggggtcggtggacgtggtgatcggcacccaccgg
ctgttctcctcggaggtgaagttcaaggacctcggtctggtgatcgtggacgaggagcag
cggttcggcgtcgagcacaaggagcagctgaagaagctgcgggccaacgtggacgtgctg
acgatgtcggcgacgccgatcccgcgcaccctggagatggcggtgaccggcatccgggag
atgtcgacgatcaccacgccgccggaggagcggcacccggtgctgacgttcgtcggcccg
tacgaggagaagcagatcggggcggcgctgcggcgtgagctgctgcgcgagggccaggtc
ttctacatccacaaccgggtggagtccatcgaccgggcggcggcgcggctgcgcgcgatc
gtgccggaggcgcggatcgccacggcgcacgggcagatgagcgagtcggcgctggagcag
gtggtggtggacttctgggagaagaagttcgacgtgctggtctcgacgacgatcgttgag
tccggtatcgacatctccaacgccaacaccctgatcgtggagcgcggcgacaccttcggg
ctctcgcagctgcaccagctgcgcggccgggtgggccggggccgcgagcgcggctacgcg
tacttcctgtacccgccggagcgtccgctgacggagaccgcgcacgagcggctggcgacg
atcgcccagcacaccgagatgggcgcgggcatgtacgtggcgatgaaggacctggagatc
cggggcgcgggcaatctgctgggcggggagcagtccgggcacatcgccggggtgggcttc
gatctgtatgtgcggatggtcggcgaggcggtggcggactaccgggcgacgctggaggcc
ggtggcggcgagccggaggaggcgccgctggaggtgaagatcgagctgccggtggacgcc
catgtgccgcacgactacgcgccgggtgagcggctgcggctccaggcgtaccgctcgatc
gcggcggcgacgacggaggaggacatcgcggcggtgcgcgaggagctgaccgaccgctac
ggtccgctgcccgagccggtggagaacctgctgctggtggcggggctgcgaatgctggcg
cggtcctgcggggtgggggacatcacgctccagggcaacaagatccgcttctcgccggtg
gagctgcgcgagtcgcaggagctgcggctgacccgggtgtacccggggtccgtggtgaag
cgggcggcggggcaggtgctggtgccgcgccccgcgacggcgagggtcggcgggaagccg
ctgacggggcggcagctgctggcgtggacgggcgagttcctgaccacgatcccggggtcc
tga
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