Streptomyces sp. JH002: H7827_20855
Help
Entry
H7827_20855 CDS
T11115
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
strj Streptomyces sp. JH002
Pathway
strj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
strj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H7827_20855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
strj03019
]
H7827_20855
03009 Ribosome biogenesis [BR:
strj03009
]
H7827_20855
Enzymes [BR:
strj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
H7827_20855
Messenger RNA biogenesis [BR:
strj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H7827_20855
Ribosome biogenesis [BR:
strj03009
]
Prokaryotic type
rRNA processing factors
H7827_20855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
XVJ77838
LinkDB
All DBs
Position
4566868..4571700
Genome browser
AA seq
1610 aa
AA seq
DB search
MHASHESAEADVTTERDRDDTNTPSGTLPPRRRRRAASRPAGPPAGTDNETTAPQVAAAS
GERPERTSGSEGSAGTAVSGAAADPAPASASAAEEPAAPRKRRRATRPAAATDTAPTAET
GDTAGADGLGDTEPAAPRARRRATRSATAPDAAAENTTTPETGPEAAAEPVAARGRRRAG
VKSDEETAAPRARRRTTREATETAGSEVAEATPAADGESEPAAPRRRGRTSRAASVTEPQ
AETAPVETAPAEEAAEQAPEPRKRRRATRVASAPAAAEAGARETQAPAPADSDTAATGTS
HESGSTADETSAPRGRRRAGGSGESTPDAGAAEEQAAAPRQRRRATRVASAPAAPAEETH
RTDAADSAAQPAPAPAPEAQSVTGTDSQDEPAAAPRRRRRATRPASAPEATFASPAGAQD
APVASGDSADEAAAPRGRRRATAPADVPADSPAAAEEALAPRQRRRATRAASAPEATFEA
AAQETPVESGEAAAEEAPAPRQRRRATRTAADAPADTAAAAEETTAPRGRRRATRGAAAP
EATFEAAAQDAPAESGDSAAEETSGPRQRRRATRTATAPAAPAVADAADQGEDEAARPRR
RATRGTSEEADVNRPDEDATAPRRRRRATRAASTSTDEGKARKSVTEDRAGSESEPMPPA
VPVPATAVFQPPVFQPPMFQTPERAAAEAAAALAEADAEPEDELDVVGEENEEAETSDES
ERPSRRRRRGGRRRRRGESTERAAETEDDTEEAPAEPAESPRAERETEPEAPAEPEREAE
ADAEEDESGSGSGSSRRRRRRRRRTEESGEAGGSGADDPERTVIKVREPRKKKDHEPTES
GDGVQSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQQGDRTQ
IGVLEDNVLVEHFVNKEQSSSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNF
ESLGLGNGPRRIEAALKSGQPVLVQVTKDPIGHKGARLTSQISLPGRYLVYVPEGSMTGI
SRKLPDTERARLKQILKKILPEDAGVIVRTAAEGASEEELTHDVERLQAQWEEIQKRAKK
GNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWQTIHGYVSQVAPDLSERLQRWTS
EVDVFATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMIVIDVNTGRFTGQGGNLEETVT
RNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVT
SLGLVQMTRKRVGQGLLESFSEQCVHCNGRGVIVHMEQPHTHAASGGGGGKKGKGGKAGR
KEKAAAAAAPEAEVEAAPVPEAVPAPLPEAGEEKVPEVVPVVEPAAAFTPDEELYGSVAE
AEEAARRGPRGRRRASRKASAPAGAPKPVAEAAEEAVTVVPAAEAPRQPEPAPEVEAAPA
PVTEEPAPRRRTRKASAPAGSPKVADEAPALVVVASEPVAEAPAQEQPAAEPAVAEEPAP
KRRRAVRRASAPAGSPEGGTEAAVTVIASAGGSEEPERKAPAKKTTKKAAAKKTTAKKTA
AAKKTTAKKTATAKKTAAKKSGTAKKSSTAKKTAAAEQQAPPSVSASAED
NT seq
4833 nt
NT seq
+upstream
nt +downstream
nt
atgcacgcatcacacgagtccgccgaagcggacgtgacgacagaacgcgaccgcgacgac
acgaacaccccgagcggcacgctgcccccgcggcggcggcgccgggccgcgagccggccg
gcgggtccgccggccggtacggacaacgagacgacggccccccaggtggcggccgcatcg
ggtgaacgtcccgaacgcacttccgggagtgagggctccgccggtaccgcggtgagcggt
gcggcggccgacccggcccccgcttccgcttccgccgcggaggagcccgccgcaccgcgc
aagcggcgccgcgcgacgcggccggccgccgccacggacacggcgccgaccgcggagacc
ggcgacaccgccggtgccgacgggctgggcgacaccgagcccgccgcgccccgtgcgcgc
cggcgcgccacccgttcggcgaccgcgccggacgccgccgccgagaacaccacgaccccc
gagaccggccccgaggccgccgcagaacccgtggccgcccgggggcggcgccgggccggt
gtcaagagcgacgaggagacggccgcgccgcgtgcccgtcgccgcaccacgcgtgaggcc
accgagaccgccgggagcgaggtggccgaggccacgcccgccgccgacggcgagagcgag
cccgcggcgccgcgccggcggggccgtacgagccgcgccgcgtccgtgaccgagccccag
gcggagacggccccggtggagacggctccggcggaggaagccgccgagcaggcccccgag
ccgcgcaagcggcgtcgtgcgacgcgcgtcgcgtccgccccggcggcggccgaggccggt
gcccgggagacccaggcccccgcgccggcggacagcgacaccgccgcgaccgggacgagc
catgagtccggcagcaccgcagatgagacgagcgcgccccgtggccgccgccgtgcgggc
ggctccggtgagagcaccccggacgccggtgccgccgaggagcaggccgccgccccgcgc
cagcgtcgccgtgcgacgcgcgtcgcgtcggcgcccgcggcccccgccgaggagacgcac
cggaccgatgccgcggacagcgccgcccagcccgcgcccgccccggcgccggaagcacag
tccgtgaccgggaccgacagccaggacgagccggccgccgcgccgcgccgccgccgccgt
gccacccgccccgcgtccgctcccgaggcgaccttcgcgtcccccgccggtgcccaggac
gctccggtggcgtccggtgacagcgccgacgaggccgccgcgccgcgtgggcgccggcgt
gcgaccgcgcccgccgacgtaccggccgactcccctgccgccgccgaggaggcgctcgcg
ccgcgtcagcgtcggcgtgcgacccgtgccgcgtcggcccctgaggcgacgttcgaggcc
gccgcgcaggagactccggtcgagtccggtgaggccgcggccgaggaggcgcccgcgccg
cgtcagcgtcgccgcgccacccgtaccgccgccgacgcaccggccgacaccgctgccgcc
gctgaggagaccacggctccccgtggacgccgacgggcgacgcgtggcgcggccgctcct
gaggcgaccttcgaggccgccgcgcaggacgctccggccgagtccggtgacagcgccgcc
gaggagacctccggcccgcgtcagcggcgccgcgccacccgtaccgccaccgcgccggcc
gctcccgccgtcgcggacgcggcggaccagggcgaggacgaggccgcacgcccgcgtcgc
cgtgcgacgcgtggcacttcggaagaggctgacgtgaaccggcccgacgaggacgccacc
gcgccgcggcggcgccggcgggccacccgggccgcttccacctcaactgacgaaggaaag
gccaggaaatctgtgactgaggaccgagcggggagcgagtcggagccgatgccgccggcc
gtgccggtgccggcgaccgccgtgttccagccgccggtcttccagccgccgatgttccag
acgcccgagcgggccgccgccgaggcggcggctgcgctggccgaggccgacgccgaaccc
gaggacgagctcgatgtcgtcggcgaggagaacgaggaggccgagacctccgacgagagc
gagcggccctcgcgccgccggcgccgtggtgggcgccgcaggcggcggggcgagagcacc
gagcgtgccgccgagaccgaggacgacaccgaggaggccccggcggagcccgccgagagc
ccccgggccgagcgggagaccgagcccgaggccccggccgagcccgagcgtgaggctgag
gccgacgcggaggaggacgagtccggttccggttccggctcctcccgtcgccgccgccgt
cgccgtcgccgcaccgaggagtccggcgaggccggcggttcgggcgccgacgaccccgag
cgcacggtgatcaaggtccgcgagccccgcaagaagaaggaccacgagccgaccgagagc
ggcgacggcgtgcagtccatcaagggctccacccgtctggaggccaagaagcagcgccgc
cgcgaaggccgtgagcagggccggcggcgggtgccgatcatcaccgaggccgagttcctg
gcgcgccgcgaggccgtcgagcgggtcatggtggtgcgccagcagggcgaccgcacccag
atcggggtgctggaggacaacgtcctcgtcgagcacttcgtgaacaaggagcagtcctcc
agctacgtcggcaacgtctacctcggcaaggtgcagaacgtgctgccctcgatggaggcg
gcgttcgtcgacatcggcaagggccgcaacgcggtgctgtacgccggtgaggtcaacttc
gagtccctggggctcggcaacggcccgcgccgcatcgaggccgccctgaagtcgggccag
cccgtcctcgtccaggtcaccaaggacccgatcgggcacaagggagcccggctgaccagc
cagatctccctgcccggccggtacctggtgtacgtgcccgaggggtcgatgaccgggatc
agccgcaagctgccggacaccgagcgggcgcggctgaagcagatcctgaagaagatcctc
cccgaggacgcgggggtcatcgtgcgcaccgccgccgagggcgccagcgaggaggagctg
acccacgacgtcgagcggctccaggcgcagtgggaggagatccagaagcgggcgaagaag
ggcaacgccccgaccctgctgtacggcgagcccgacatgaccgtgcgggtggtccgggac
atcttcaacgaggacttctcgaaggtgatcgtcagcggtgacgaggcgtggcagaccatc
cacggctacgtctcgcaggtggcgccggacctgtccgagcggctgcagcggtggacctcg
gaggtggacgtcttcgccacctaccggatcgacgagcagctgatgaaggcgctggaccgc
aaggtgtggctgcccagcggtggttcgctggtgatcgaccgcaccgaggccatgatcgtc
atcgatgtgaacaccggccggttcaccggtcagggcggcaacctcgaggagaccgtcacc
aggaacaacctggaggcggccgaggagatcgtgcggcagctgcggctgcgggacctcggc
ggcatcatcgtgatcgacttcatcgacatggtgctggagtcgaaccgggatctggtgctg
cggcggctgctggagtgcctgggccgggaccgtaccaagcaccaggtggccgaggtcacc
tcgctggggctcgtgcagatgacccgcaagcgggtcgggcaggggctgctggagtcgttc
tccgagcagtgcgtgcactgcaacggccgcggtgtcatcgtccacatggagcagccgcac
acgcacgcggcgtccggtggcgggggcggcaagaagggcaagggcggcaaggccgggcgc
aaggagaaggcggcggccgccgcggctcccgaggccgaggtcgaggccgcgccggtgccc
gaggcggtgcccgctccgctgccggaggccggcgaggagaaggtgcccgaggtcgttccg
gtggtcgagccggccgccgcgttcaccccggacgaggagctgtacgggagtgtggccgag
gccgaggaggcggcgcggcgtggtccgcgcggccgtcggcgggccagccgcaaggcgagc
gctcccgccggtgccccgaagccggtggcggaggccgccgaggaggcggtgaccgtcgtc
ccggcggccgaggccccgcggcagcccgagcccgcgcccgaggtggaggccgcaccggct
ccggtgacggaggagcccgcgccgcggcgccgtacccgcaaggcgtcggctccggccggt
tcgccgaaggtggcggacgaggcgccggccctggtggtcgtggcctccgagccggtcgcc
gaggcgccggcccaggagcagccggccgccgagccggccgtggccgaggagcccgcgccc
aagcggcgccgggcggtacgccgggcgtccgcgccggccgggtcgcccgagggcggtacg
gaggcggcggtgacggtcatcgcgtcggcgggcgggtccgaggagccggagcgcaaggca
ccggcgaagaagaccaccaagaaggccgccgcgaagaagaccacggcgaagaagaccgcc
gcggccaagaagacgacggcgaagaagacggccacggcgaagaagaccgcggcgaagaag
agtggtacggcgaagaagtcctccaccgcgaagaagaccgcggcggcggagcagcaggcg
ccgccgtcggtgtcggcctccgcggaggactga
DBGET
integrated database retrieval system
